Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.009G041800.3 |
Family | GT35 |
Protein Properties | Length: 813 Molecular Weight: 92150.5 Isoelectric Point: 6.0255 |
Chromosome | Chromosome/Scaffold: 09 Start: 4872894 End: 4880610 |
Description | alpha-glucan phosphorylase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT35 | 126 | 812 | 0 |
ALNQLGHQLEDIVEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQRITKEGQEEIAEDWLEKFSPWEIVRHDVVFPVRFFGHVEVNP DGSRKWVGGDIVQALAYDVPIPGYKTKNTISLRLWEARASSDDFNLFLFNDGQYESASQLHSRAQQICAVLYPGDATENGKLLRLKQQFFLCSASLQDII LRFKERKNENGSWNWSEFSSKVAVQLNDTHPTLAIPELMRLLLDNEGLGWDEAWDVTTRTVAYTNHTVLPEALEKWSQSVMWKLLPRHMEIIEEIDKRFI TMIRTTRPDLESKLPSMCILDNNPQKPVVRMANLCVVSSHKVNGVAQLHSDILKAELFADYVSIWPKKFQNKTNGITPRRWLRFCSPELSNIITKWLKTD QWVTNLDLLVGLREFAENADLQAEWSSAKMANKQRLAQYILRETGVSIDPNSLFDIQVKRIHEYKRQLMNILGAIYRYKKLKEMSTEERKKTTPRTIMFG GKAFATYTNAKRIVKLVNDVGTVVNTDPEVNSYLKVVFVPNYNVSVAEMLIPGSELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEIGEE NFFLFGATADEVPRLRKERENGLFKPDPRFEEAKMYIRSGAFGSYDYNPLLESLEGNSGYGRGDYFLVGHDFPSYMDAQERVDEAYK |
Full Sequence |
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Protein Sequence Length: 813 Download |
MAPASVKPNS AGAATSTATV SAVSSSKVPP IARPLAGEPE EVASNINYHA QFSPHFSPFK 60 FEPEQAYFAT AESVRDRLIQ QWNETYVHYH KEDPKQTYYL SMEYLQGRAL TNAIGNLDIQ 120 DAYGEALNQL GHQLEDIVEQ EKDAALGNGG LGRLASCFLD SMATLNLPAW GYGLRYRYGL 180 FKQRITKEGQ EEIAEDWLEK FSPWEIVRHD VVFPVRFFGH VEVNPDGSRK WVGGDIVQAL 240 AYDVPIPGYK TKNTISLRLW EARASSDDFN LFLFNDGQYE SASQLHSRAQ QICAVLYPGD 300 ATENGKLLRL KQQFFLCSAS LQDIILRFKE RKNENGSWNW SEFSSKVAVQ LNDTHPTLAI 360 PELMRLLLDN EGLGWDEAWD VTTRTVAYTN HTVLPEALEK WSQSVMWKLL PRHMEIIEEI 420 DKRFITMIRT TRPDLESKLP SMCILDNNPQ KPVVRMANLC VVSSHKVNGV AQLHSDILKA 480 ELFADYVSIW PKKFQNKTNG ITPRRWLRFC SPELSNIITK WLKTDQWVTN LDLLVGLREF 540 AENADLQAEW SSAKMANKQR LAQYILRETG VSIDPNSLFD IQVKRIHEYK RQLMNILGAI 600 YRYKKLKEMS TEERKKTTPR TIMFGGKAFA TYTNAKRIVK LVNDVGTVVN TDPEVNSYLK 660 VVFVPNYNVS VAEMLIPGSE LSQHISTAGM EASGTSNMKF ALNGCLIIGT LDGANVEIRE 720 EIGEENFFLF GATADEVPRL RKERENGLFK PDPRFEEAKM YIRSGAFGSY DYNPLLESLE 780 GNSGYGRGDY FLVGHDFPSY MDAQERVDEA YK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd04300 | GT1_Glycogen_Phosphorylase | 0 | 43 | 812 | 778 | + This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
TIGR02093 | P_ylase | 0 | 46 | 812 | 775 | + glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
pfam00343 | Phosphorylase | 0 | 126 | 812 | 692 | + Carbohydrate phosphorylase. The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin. | ||
PRK14985 | PRK14985 | 0 | 99 | 812 | 720 | + maltodextrin phosphorylase; Provisional | ||
PRK14986 | PRK14986 | 0 | 69 | 812 | 751 | + glycogen phosphorylase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004645 | phosphorylase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM29154.1 | 0 | 14 | 812 | 4 | 799 | starch phosphorylase type H [Citrus hybrid cultivar] |
DDBJ | BAG31926.1 | 0 | 14 | 812 | 2 | 802 | alpha-1,4-glucan phosphorylase H isozyme [Cucurbita maxima] |
RefSeq | XP_002280732.1 | 0 | 4 | 812 | 2 | 802 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313399.1 | 0 | 1 | 812 | 1 | 812 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520435.1 | 0 | 1 | 812 | 1 | 808 | glycogen phosphorylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ygp_B | 0 | 66 | 811 | 68 | 838 | A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With Phosphate Bound In The Active Site. |
PDB | 1ygp_A | 0 | 66 | 811 | 68 | 838 | A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With Phosphate Bound In The Active Site. |
PDB | 1z8d_A | 0 | 32 | 812 | 16 | 793 | A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A With Amp And Glucose |
PDB | 4el5_A | 0 | 32 | 812 | 4 | 781 | A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A With Amp And Glucose |
PDB | 4el0_A | 0 | 32 | 812 | 4 | 781 | A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A With Amp And Glucose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1826 | EC-2.4.1.1 | phosphorylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO782200 | 412 | 182 | 593 | 0 |
HO418036 | 539 | 252 | 769 | 0 |
EL450777 | 329 | 366 | 694 | 0 |
FS996006 | 359 | 451 | 809 | 0 |
GT043461 | 330 | 472 | 801 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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