Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.009G060400.1 |
Family | GH28 |
Protein Properties | Length: 462 Molecular Weight: 50652.3 Isoelectric Point: 8.0214 |
Chromosome | Chromosome/Scaffold: 09 Start: 6243749 End: 6247688 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 117 | 449 | 0 |
EEACSSKGSAIIVIPKNKIYYLKPVTFSGPCESDLVFKIFGTIKASAKVSDYENDRRHWLVFENVQNFRVRGGGTIDGNGKIWWENSCKINKSQPCQHAP TAVTFLECKSLIVANLRFQNAQQMHLSFQNCVNVRALNLMVIAPGTSPNTDGIHVTGTQNIRIRNCVIRTGDDCISIVSGSKNVEATDITCGPGHGISIG SLGADNSGAEVSNVFVNRATISGTTNGVRIKTWQGGSGYARNIVFQNVVMRNVTNPIIINQNYCDQDSPCEEQTSAVQISNVMYKNIKGTSASDVAVKFD CSKNIPCRGILLQDVNIALEENGKPEASCANVN |
Full Sequence |
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Protein Sequence Length: 462 Download |
MHPQYPPRHL LLLLILLPSF VSCFSSTYQE SPVANVLEHT HSHDDSRDYR PYFSTIDRKD 60 NDLKHIFPRL LNFEAKVVAR LDQASAPVSS AKVVNVDDFG AKADGTDDSQ AFKKAWEEAC 120 SSKGSAIIVI PKNKIYYLKP VTFSGPCESD LVFKIFGTIK ASAKVSDYEN DRRHWLVFEN 180 VQNFRVRGGG TIDGNGKIWW ENSCKINKSQ PCQHAPTAVT FLECKSLIVA NLRFQNAQQM 240 HLSFQNCVNV RALNLMVIAP GTSPNTDGIH VTGTQNIRIR NCVIRTGDDC ISIVSGSKNV 300 EATDITCGPG HGISIGSLGA DNSGAEVSNV FVNRATISGT TNGVRIKTWQ GGSGYARNIV 360 FQNVVMRNVT NPIIINQNYC DQDSPCEEQT SAVQISNVMY KNIKGTSASD VAVKFDCSKN 420 IPCRGILLQD VNIALEENGK PEASCANVNL RKRGDVFPQC S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-97 | 89 | 448 | 367 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-106 | 89 | 458 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-124 | 120 | 448 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-150 | 84 | 458 | 378 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-160 | 70 | 461 | 395 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 10 | 460 | 19 | 458 | polygalacturonase precursor [Cucumis melo] |
EMBL | CBI24904.1 | 0 | 20 | 461 | 7 | 456 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274775.1 | 0 | 26 | 461 | 9 | 449 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313308.1 | 0 | 86 | 461 | 1 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 1 | 460 | 1 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-24 | 183 | 379 | 110 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 5e-19 | 189 | 448 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-19 | 189 | 448 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-19 | 189 | 448 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-19 | 189 | 448 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |