Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.009G087700.2 |
Family | GH10 |
Protein Properties | Length: 575 Molecular Weight: 64604.1 Isoelectric Point: 6.9474 |
Chromosome | Chromosome/Scaffold: 09 Start: 8141602 End: 8144799 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 226 | 506 | 0 |
QTRSEFPFGCGMNFHIIDSTDYQNWFASRFKYTTFTNQMKWYSNEPKQGQENYTVADTMVKFAQQNGISIRGHNILWDDPKYQPEWVKNLTSDELRKAAA KRVDSVVSRYAGQLIAWDVMNENLHFSFFEDKLGKNASSRYFKRAYELDPKTTMFLNEFNTIEYSNDEDVDPISYMKKLSVILSNPGNQGILAGIGLEGH FGVGQPNLAYMRSVLDILSSTGLPIWLTEVDVVKEPNQAEYLEQILREGYCHHAVEGIIMFAGPATAGFNATTLVDKDFKN |
Full Sequence |
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Protein Sequence Length: 575 Download |
MKILAEALIL VFFSIFLGSE HRICQAFSSN YNARTKCLIE PKTAQDGGGI IANPDFTHGM 60 EGWAVYGQGA MKEQMSRNGN RFIVAYNRTQ SLDSISQKVQ LGGGLIYSFS AWIQINKGSE 120 RVAVVFKIPH TERVIGGRVL ARNGCWSLLK GGIFANFTSH ADILFESNDT STEIWVDSVS 180 LQQFTLEQWR AQQDKKIDKE RKSKVRFKVT YGNGTAVDSA TVSIKQTRSE FPFGCGMNFH 240 IIDSTDYQNW FASRFKYTTF TNQMKWYSNE PKQGQENYTV ADTMVKFAQQ NGISIRGHNI 300 LWDDPKYQPE WVKNLTSDEL RKAAAKRVDS VVSRYAGQLI AWDVMNENLH FSFFEDKLGK 360 NASSRYFKRA YELDPKTTMF LNEFNTIEYS NDEDVDPISY MKKLSVILSN PGNQGILAGI 420 GLEGHFGVGQ PNLAYMRSVL DILSSTGLPI WLTEVDVVKE PNQAEYLEQI LREGYCHHAV 480 EGIIMFAGPA TAGFNATTLV DKDFKNTPSG DVVDKLIDEW RTKPTETKAD GEGYFEMSLF 540 HGDYNITIKN PVTNCSTTLS SRVTKGTTCI HIIA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 0.007 | 48 | 172 | 140 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 1.0e-30 | 243 | 475 | 242 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 4.0e-48 | 223 | 513 | 316 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 8.0e-74 | 264 | 513 | 272 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19437.1 | 0 | 1 | 565 | 1 | 568 | unknown [Glycine max] |
RefSeq | XP_002313181.1 | 0 | 12 | 572 | 6 | 571 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313182.1 | 0 | 36 | 574 | 4 | 542 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532419.1 | 0 | 37 | 573 | 8 | 544 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
RefSeq | XP_002532422.1 | 0 | 36 | 563 | 22 | 549 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 3e-23 | 226 | 457 | 11 | 240 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 1i1w_A | 3e-23 | 226 | 457 | 11 | 240 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 4e-23 | 226 | 457 | 11 | 240 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1gor_A | 4e-23 | 226 | 457 | 11 | 240 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1goq_A | 4e-23 | 226 | 457 | 11 | 240 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |