Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.009G087800.1 |
Family | GH10 |
Protein Properties | Length: 579 Molecular Weight: 65119.5 Isoelectric Point: 6.649 |
Chromosome | Chromosome/Scaffold: 09 Start: 8147214 End: 8150390 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 226 | 509 | 0 |
QTKSDFPFGCCMNYHIINSTDYQNWFTLRFKYTTFTNEMKWYTTEKIQGQENYTVADAMVRFAQQNGISIRGHNIFWDNPVYQPHWVKNLTLEELQNAAD QRIKSVVSRYAGQLIAWDVMNENLHFSFFEDKLGKNASAEYYARAYQLDPDTTMFLNEYNTIEYSSDEKANPFNYKTKLDEILSYPGNQGISAGIGLQGH FGSGQPNLAYMRSCLDILGSTGLPIWLTEVDVGKDPNQAEYLEQVLREGYSHPAVKGIIMFVGPANAGFNSTVLADEDFKNTPA |
Full Sequence |
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Protein Sequence Length: 579 Download |
MMKILAGCCV LVLISIFLPS VCRIHAFSYD YSATTECLIE PQRAQYEGGI IANPDFTHGV 60 QGWTVFGQGA KKEGISKNGN RYIVAHSRSQ PLDSISQKVQ LEKGKLYSFS AWVQINGGRG 120 NVAVVFKMSR GELVRGGKVL ARNGCWSLLK GGVFANTSSR VEILFESKNT EAEIWVDNVS 180 LQPFTMEQWR SHQDESTDKE RKGKVRFEVR NANGTAIEGA RFSIKQTKSD FPFGCCMNYH 240 IINSTDYQNW FTLRFKYTTF TNEMKWYTTE KIQGQENYTV ADAMVRFAQQ NGISIRGHNI 300 FWDNPVYQPH WVKNLTLEEL QNAADQRIKS VVSRYAGQLI AWDVMNENLH FSFFEDKLGK 360 NASAEYYARA YQLDPDTTMF LNEYNTIEYS SDEKANPFNY KTKLDEILSY PGNQGISAGI 420 GLQGHFGSGQ PNLAYMRSCL DILGSTGLPI WLTEVDVGKD PNQAEYLEQV LREGYSHPAV 480 KGIIMFVGPA NAGFNSTVLA DEDFKNTPAG DVVDKLIDEW KFQTTEIKAD GKGSIEIPLF 540 HGDYNITVKD PVSSSLTAFS YKMTRDVTRD TVHLRINA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 0.001 | 48 | 163 | 121 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 3.0e-31 | 262 | 476 | 228 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 3.0e-55 | 223 | 513 | 315 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 2.0e-77 | 264 | 513 | 273 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19437.1 | 0 | 2 | 578 | 1 | 581 | unknown [Glycine max] |
RefSeq | XP_002313181.1 | 0 | 17 | 578 | 13 | 575 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313182.1 | 0 | 34 | 568 | 2 | 536 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532419.1 | 0 | 37 | 577 | 8 | 549 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
RefSeq | XP_002532422.1 | 0 | 36 | 576 | 22 | 562 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 7e-24 | 233 | 513 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1tux_A | 3e-23 | 255 | 458 | 40 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1x_A | 6e-23 | 255 | 458 | 40 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1w_A | 6e-23 | 255 | 458 | 40 | 241 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 7e-23 | 255 | 461 | 40 | 245 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |