Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.009G087800.2 |
Family | GH10 |
Protein Properties | Length: 575 Molecular Weight: 64765.7 Isoelectric Point: 6.334 |
Chromosome | Chromosome/Scaffold: 09 Start: 8147224 End: 8149942 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 222 | 505 | 0 |
QTKSDFPFGCCMNYHIINSTDYQNWFTLRFKYTTFTNEMKWYTTEKIQGQENYTVADAMVRFAQQNGISIRGHNIFWDNPVYQPHWVKNLTLEELQNAAD QRIKSVVSRYAGQLIAWDVMNENLHFSFFEDKLGKNASAEYYARAYQLDPDTTMFLNEYNTIEYSSDEKANPFNYKTKLDEILSYPGNQGISAGIGLQGH FGSGQPNLAYMRSCLDILGSTGLPIWLTEVDVGKDPNQAEYLEQVLREGYSHPAVKGIIMFVGPANAGFNSTVLADEDFKNTPA |
Full Sequence |
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Protein Sequence Length: 575 Download |
MVFEGFSPLH LSFTDAVCRI HAFSYDYSAT TECLIEPQRA QYEGGIIANP DFTHGVQGWT 60 VFGQGAKKEG ISKNGNRYIV AHSRSQPLDS ISQKVQLEKG KLYSFSAWVQ INGGRGNVAV 120 VFKMSRGELV RGGKVLARNG CWSLLKGGVF ANTSSRVEIL FESKNTEAEI WVDNVSLQPF 180 TMEQWRSHQD ESTDKERKGK VRFEVRNANG TAIEGARFSI KQTKSDFPFG CCMNYHIINS 240 TDYQNWFTLR FKYTTFTNEM KWYTTEKIQG QENYTVADAM VRFAQQNGIS IRGHNIFWDN 300 PVYQPHWVKN LTLEELQNAA DQRIKSVVSR YAGQLIAWDV MNENLHFSFF EDKLGKNASA 360 EYYARAYQLD PDTTMFLNEY NTIEYSSDEK ANPFNYKTKL DEILSYPGNQ GISAGIGLQG 420 HFGSGQPNLA YMRSCLDILG STGLPIWLTE VDVGKDPNQA EYLEQVLREG YSHPAVKGII 480 MFVGPANAGF NSTVLADEDF KNTPAGDVVD KLIDEWKFQT TEIKADGKGS IEIPLFHGDY 540 NITVKDPVSS SLTAFSYKMT RDVTRDTVHL RINA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 0.002 | 44 | 159 | 121 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 6.0e-31 | 258 | 472 | 228 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 5.0e-55 | 219 | 509 | 315 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 4.0e-77 | 260 | 509 | 273 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19437.1 | 0 | 20 | 574 | 27 | 581 | unknown [Glycine max] |
RefSeq | XP_002313181.1 | 0 | 1 | 574 | 1 | 575 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313182.1 | 0 | 30 | 570 | 2 | 540 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532419.1 | 0 | 33 | 573 | 8 | 549 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
RefSeq | XP_002532422.1 | 0 | 32 | 572 | 22 | 562 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 7e-24 | 229 | 509 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1tux_A | 3e-23 | 251 | 454 | 40 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1x_A | 5e-23 | 251 | 454 | 40 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1w_A | 5e-23 | 251 | 454 | 40 | 241 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 7e-23 | 251 | 457 | 40 | 245 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV141191 | 250 | 218 | 467 | 0 |
ES830806 | 291 | 109 | 397 | 0 |
EX529522 | 295 | 19 | 311 | 0 |
CV887102 | 262 | 311 | 572 | 0 |
ES830806 | 50 | 395 | 444 | 0.76 |
Sequence Alignments (This image is cropped. Click for full image.) |
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