Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.009G087800.3 |
Family | GH10 |
Protein Properties | Length: 576 Molecular Weight: 64893.8 Isoelectric Point: 6.334 |
Chromosome | Chromosome/Scaffold: 09 Start: 8147224 End: 8149816 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 223 | 506 | 0 |
QTKSDFPFGCCMNYHIINSTDYQNWFTLRFKYTTFTNEMKWYTTEKIQGQENYTVADAMVRFAQQNGISIRGHNIFWDNPVYQPHWVKNLTLEELQNAAD QRIKSVVSRYAGQLIAWDVMNENLHFSFFEDKLGKNASAEYYARAYQLDPDTTMFLNEYNTIEYSSDEKANPFNYKTKLDEILSYPGNQGISAGIGLQGH FGSGQPNLAYMRSCLDILGSTGLPIWLTEVDVGKDPNQAEYLEQVLREGYSHPAVKGIIMFVGPANAGFNSTVLADEDFKNTPA |
Full Sequence |
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Protein Sequence Length: 576 Download |
MVFEGFSPLH LSFTDAVCRI HAFSYDYSAT TEQCLIEPQR AQYEGGIIAN PDFTHGVQGW 60 TVFGQGAKKE GISKNGNRYI VAHSRSQPLD SISQKVQLEK GKLYSFSAWV QINGGRGNVA 120 VVFKMSRGEL VRGGKVLARN GCWSLLKGGV FANTSSRVEI LFESKNTEAE IWVDNVSLQP 180 FTMEQWRSHQ DESTDKERKG KVRFEVRNAN GTAIEGARFS IKQTKSDFPF GCCMNYHIIN 240 STDYQNWFTL RFKYTTFTNE MKWYTTEKIQ GQENYTVADA MVRFAQQNGI SIRGHNIFWD 300 NPVYQPHWVK NLTLEELQNA ADQRIKSVVS RYAGQLIAWD VMNENLHFSF FEDKLGKNAS 360 AEYYARAYQL DPDTTMFLNE YNTIEYSSDE KANPFNYKTK LDEILSYPGN QGISAGIGLQ 420 GHFGSGQPNL AYMRSCLDIL GSTGLPIWLT EVDVGKDPNQ AEYLEQVLRE GYSHPAVKGI 480 IMFVGPANAG FNSTVLADED FKNTPAGDVV DKLIDEWKFQ TTEIKADGKG SIEIPLFHGD 540 YNITVKDPVS SSLTAFSYKM TRDVTRDTVH LRINA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 0.002 | 45 | 160 | 121 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 6.0e-31 | 259 | 473 | 228 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 5.0e-55 | 220 | 510 | 315 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 4.0e-77 | 261 | 510 | 273 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19437.1 | 0 | 20 | 575 | 27 | 581 | unknown [Glycine max] |
RefSeq | XP_002313181.1 | 0 | 1 | 575 | 1 | 575 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313182.1 | 0 | 31 | 571 | 2 | 540 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532419.1 | 0 | 30 | 574 | 4 | 549 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
RefSeq | XP_002532422.1 | 0 | 33 | 573 | 22 | 562 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 8e-24 | 230 | 510 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1tux_A | 3e-23 | 252 | 455 | 40 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1x_A | 5e-23 | 252 | 455 | 40 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1w_A | 5e-23 | 252 | 455 | 40 | 241 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 7e-23 | 252 | 458 | 40 | 245 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV141191 | 250 | 219 | 468 | 0 |
ES830806 | 291 | 110 | 398 | 0 |
EX529522 | 296 | 19 | 312 | 0 |
CV887102 | 262 | 312 | 573 | 0 |
ES830806 | 50 | 396 | 445 | 0.75 |
Sequence Alignments (This image is cropped. Click for full image.) |
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