Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.009G169100.1 |
Family | GH28 |
Protein Properties | Length: 411 Molecular Weight: 43944.1 Isoelectric Point: 8.6699 |
Chromosome | Chromosome/Scaffold: 09 Start: 12836640 End: 12838576 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 66 | 398 | 0 |
WKEACRATGKVELLIPKGTYLIGPVKFAGPCKNVSSLTGYLKATAKLSRYGSGTGWVEFGWLERLTLTGGGTFDGQGAKAWPYNNCTNDSKCKLLPTNVK FVAMNQTVVQGITSLNSKFFHIALVECKNFKGTKIKISAPADSPNTDGIHVERSSSVYISQSLIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGR YEDEGDVSGLVVRDCAISGTMNGIRIKTWANSPGSSAATNMTFENIVMNNVTNPIIIDQSYCPFSSCISTEPSKVKLSDIYFKQIRGTSSSAVAVALECS KGIPCQNIYLENVHLELSSGEKQATSSCKNVRA |
Full Sequence |
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Protein Sequence Length: 411 Download |
MLLLLLSFFC FNAVVFTGAD GQGLEAEARR PISHHKGNSS LLFDVKRFGA RADGRTDDSK 60 AFIAAWKEAC RATGKVELLI PKGTYLIGPV KFAGPCKNVS SLTGYLKATA KLSRYGSGTG 120 WVEFGWLERL TLTGGGTFDG QGAKAWPYNN CTNDSKCKLL PTNVKFVAMN QTVVQGITSL 180 NSKFFHIALV ECKNFKGTKI KISAPADSPN TDGIHVERSS SVYISQSLIG TGDDCISIGQ 240 GNSQVTITRI RCGPGHGISV GSLGRYEDEG DVSGLVVRDC AISGTMNGIR IKTWANSPGS 300 SAATNMTFEN IVMNNVTNPI IIDQSYCPFS SCISTEPSKV KLSDIYFKQI RGTSSSAVAV 360 ALECSKGIPC QNIYLENVHL ELSSGEKQAT SSCKNVRARY IGEQIPPPCA * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-85 | 38 | 409 | 375 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-93 | 39 | 409 | 389 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-94 | 45 | 406 | 369 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-106 | 70 | 396 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 1 | 410 | 410 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16789.1 | 0 | 61 | 409 | 1 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI37725.1 | 0 | 1 | 410 | 10 | 388 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_193552.1 | 0 | 39 | 409 | 31 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 1 | 410 | 10 | 420 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 1 | 410 | 1 | 410 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-21 | 134 | 399 | 115 | 375 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-18 | 104 | 396 | 54 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-18 | 104 | 396 | 54 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-18 | 104 | 396 | 54 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-18 | 104 | 396 | 54 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |