Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G005500.1 |
Family | GH28 |
Protein Properties | Length: 454 Molecular Weight: 48984.2 Isoelectric Point: 4.6886 |
Chromosome | Chromosome/Scaffold: 10 Start: 509110 End: 512890 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 414 | 0 |
DKGGAQLYVPPGKWLTGSFSLTSHLTLFLEKGAVILGSQDPSHWDLVDPLPSYGRGIELPGKRYRSLINGDMLTDVVVTGDNGTIDGQGSVWWDWFESHS LNYSRPHLVEFTSSDLVVVSNLTFLNAPAYNIHPVYCSNVLVQNISVSAPGESPYTIGIVPDSSNNVCIEDSLIKVGYDAISLKSGWDEYGIAYDRPTQD VHIRRVYLQSSSGSSIAFGSEMSGGISNVYVEQVYLYNSFSGIEFRTTKGRGGYIKRIIISNVELKNINMAFGAIGDCGSHPDDSFDPNAIPILDQITLQ NVTGSNITMAGNFTGLAESPFTSICLFNVSLTIPATSTSWTCSNV |
Full Sequence |
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Protein Sequence Length: 454 Download |
MPVALLLLLA LSIAIRIDAE ESSGVCDFKP GLKPRPHSVS ILEFGAVGDG KTLNTLAFQN 60 AIFYLKSFTD KGGAQLYVPP GKWLTGSFSL TSHLTLFLEK GAVILGSQDP SHWDLVDPLP 120 SYGRGIELPG KRYRSLINGD MLTDVVVTGD NGTIDGQGSV WWDWFESHSL NYSRPHLVEF 180 TSSDLVVVSN LTFLNAPAYN IHPVYCSNVL VQNISVSAPG ESPYTIGIVP DSSNNVCIED 240 SLIKVGYDAI SLKSGWDEYG IAYDRPTQDV HIRRVYLQSS SGSSIAFGSE MSGGISNVYV 300 EQVYLYNSFS GIEFRTTKGR GGYIKRIIIS NVELKNINMA FGAIGDCGSH PDDSFDPNAI 360 PILDQITLQN VTGSNITMAG NFTGLAESPF TSICLFNVSL TIPATSTSWT CSNVIGFSEF 420 VSPEPCPELN SSYSNSSSVC YSILKSYGKS ANL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 5.0e-12 | 37 | 262 | 228 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-16 | 37 | 255 | 219 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 7.0e-19 | 36 | 255 | 235 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 8.0e-20 | 137 | 414 | 290 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 5.0e-31 | 39 | 407 | 409 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 14 | 427 | 14 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 14 | 427 | 16 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 3 | 435 | 3 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 1 | 453 | 3 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 1 | 453 | 1 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 4e-31 | 37 | 395 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 4e-31 | 37 | 395 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 4e-31 | 37 | 395 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 4e-31 | 37 | 395 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000007 | 83 | 337 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |