Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G008600.1 |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 44149.5 Isoelectric Point: 4.7092 |
Chromosome | Chromosome/Scaffold: 10 Start: 990950 End: 993938 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 21 | 365 | 0 |
QRGGAQLYVPPGKWLTGSFSLTSHLTLFLEKGAVILGSQDPSHWDLVDPLPSYGRGIELPGKRYRSLINGDMLTDVVVTGDNGTIDGQGSVWWDWFESHS LNYSRPHLVEFTSSDLVVVSNLTFLNAPAYNIHPVYCSNVLVQNISVSAPGESPYTIGIVPDSSNNVCIEDSLIKVGYDAISLKSGWDEYGIAYDRPTQD VHIRRVYLQSSSGSSIAFGSEMSGGISNVYVEQVYLYNSFSGIEFRTTKGRGGYIKRIIISNVELKNINMAFGAIGDCGSHPDDSFDPNAIPILDQITLQ NVTGSNITMAGNFTGLAESPFTSICLFNVSLTIPATSTSWTCSNV |
Full Sequence |
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Protein Sequence Length: 405 Download |
MNEARFRQIC RRETFLIIFT QRGGAQLYVP PGKWLTGSFS LTSHLTLFLE KGAVILGSQD 60 PSHWDLVDPL PSYGRGIELP GKRYRSLING DMLTDVVVTG DNGTIDGQGS VWWDWFESHS 120 LNYSRPHLVE FTSSDLVVVS NLTFLNAPAY NIHPVYCSNV LVQNISVSAP GESPYTIGIV 180 PDSSNNVCIE DSLIKVGYDA ISLKSGWDEY GIAYDRPTQD VHIRRVYLQS SSGSSIAFGS 240 EMSGGISNVY VEQVYLYNSF SGIEFRTTKG RGGYIKRIII SNVELKNINM AFGAIGDCGS 300 HPDDSFDPNA IPILDQITLQ NVTGSNITMA GNFTGLAESP FTSICLFNVS LTIPATSTSW 360 TCSNVIGFSE FVSPEPCPEL NSSYSNSSSV CYSILNSYGK SANL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-11 | 93 | 213 | 123 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-13 | 100 | 206 | 112 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-14 | 92 | 206 | 118 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-20 | 88 | 365 | 290 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-23 | 20 | 358 | 379 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 15 | 378 | 64 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 15 | 378 | 66 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 15 | 386 | 64 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 15 | 404 | 66 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 15 | 404 | 64 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6e-25 | 19 | 346 | 54 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6e-25 | 19 | 346 | 54 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6e-25 | 19 | 346 | 54 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6e-25 | 19 | 346 | 54 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000005 | 34 | 288 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797483 | 367 | 15 | 380 | 0 |
CV713222 | 254 | 69 | 322 | 0 |
EY698033 | 283 | 63 | 340 | 0 |
HO797919 | 333 | 19 | 351 | 0 |
DV143218 | 245 | 24 | 268 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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