Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G011200.1 |
Family | GH28 |
Protein Properties | Length: 409 Molecular Weight: 44130.4 Isoelectric Point: 9.5869 |
Chromosome | Chromosome/Scaffold: 10 Start: 1409776 End: 1411594 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 68 | 396 | 0 |
KAACNYRGKARLLIPKGTFLIGATIFQGPCQGPAPIKVQIAGTLKAVPDPSMYEEDFWILFENIKGLLVTGTGTVDGQGNAVWKYNVGDGGAKFPSSIKF NHVVNGIIRQITSVNPMGFHISIVLSQNIKAKNLRIFAPSDSPNTDGIHISQTNQVYVSNSVIGTGDDCIGIIRGCTDVHIRNVTCGPGHGISIGSLGKY QDEEDVRGITVKNCTLNNTDNGIRIKTYGGSPPSQASGILFQDIVMVRVKNPIIIDQSYGNKESASRVRLSDVRYQNIRGTSTSVVGVNIKCSNTVPCER VSLSNINLNYVGAKQHNHEISSVCTNAKL |
Full Sequence |
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Protein Sequence Length: 409 Download |
MAILFTWKSS ANASLILCII AASFVSKALG HHGRADRKDP NEKVFNVLRY GAHPGREDNA 60 LSFIRAWKAA CNYRGKARLL IPKGTFLIGA TIFQGPCQGP APIKVQIAGT LKAVPDPSMY 120 EEDFWILFEN IKGLLVTGTG TVDGQGNAVW KYNVGDGGAK FPSSIKFNHV VNGIIRQITS 180 VNPMGFHISI VLSQNIKAKN LRIFAPSDSP NTDGIHISQT NQVYVSNSVI GTGDDCIGII 240 RGCTDVHIRN VTCGPGHGIS IGSLGKYQDE EDVRGITVKN CTLNNTDNGI RIKTYGGSPP 300 SQASGILFQD IVMVRVKNPI IIDQSYGNKE SASRVRLSDV RYQNIRGTST SVVGVNIKCS 360 NTVPCERVSL SNINLNYVGA KQHNHEISSV CTNAKLNYAG FQLPSPCR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 6.0e-69 | 44 | 407 | 374 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-77 | 14 | 407 | 413 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-77 | 46 | 404 | 373 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-86 | 71 | 395 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-117 | 15 | 407 | 404 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002314372.1 | 0 | 39 | 408 | 43 | 410 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314373.1 | 0 | 62 | 380 | 2 | 320 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315493.1 | 0 | 48 | 408 | 17 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334010.1 | 0 | 28 | 408 | 30 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516967.1 | 0 | 29 | 408 | 41 | 412 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-20 | 90 | 375 | 50 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.000000000000002 | 134 | 393 | 74 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.000000000000002 | 134 | 393 | 74 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.000000000000002 | 134 | 393 | 74 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.00000000000001 | 142 | 376 | 80 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG075520 | 253 | 157 | 408 | 0 |
JG075143 | 249 | 161 | 408 | 0 |
EE107069 | 248 | 55 | 299 | 0 |
CO121523 | 280 | 125 | 400 | 0 |
DV114547 | 245 | 83 | 327 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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