Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G042100.1 |
Family | GH28 |
Protein Properties | Length: 560 Molecular Weight: 60915.5 Isoelectric Point: 8.1819 |
Chromosome | Chromosome/Scaffold: 10 Start: 7242726 End: 7247004 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 169 | 516 | 0 |
EACKVAASTMIVPAEYVFLVGPISFSGPYCQANIVFQLDGTIIAPTNSNVWGRGLFQWLEFTKLVGITIQGEGTIDGSGSVWWQDYPFEDPIDNESEFIV PLNNTAQQHPPMPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDMRTSSPGDSPNTDGIHLQNSKDVLIHSTDLACGDD CVSIQTGCSNVYIHNVNCGPGHGISIGGLGKDNTKACVSNITVRDVVLHGTMTGVRIKTWQGGSGSVKGVLFSNIQVSEVQLPIVIDQFYCDKSICKNQT SAVALSGITYEKIRGTYTVKPVHFACSDALPCMDVSLTTIELQPLKEQ |
Full Sequence |
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Protein Sequence Length: 560 Download |
MSLGLHPLYK PYYHQLLPDS LKSSPVLKYT QLSLSLSLSP SHIMVNMSGL SFRCLTFMLF 60 IAFLVWSSSF HTCIARRGKH WRESRGNSAS LAKKKGKNQG NSRQKHHNGV SKPKPPPPKA 120 PSLPPPPKDD APAPSPPQKS STTFNVLDFG AKGNGKSDDT KAFQAAWAEA CKVAASTMIV 180 PAEYVFLVGP ISFSGPYCQA NIVFQLDGTI IAPTNSNVWG RGLFQWLEFT KLVGITIQGE 240 GTIDGSGSVW WQDYPFEDPI DNESEFIVPL NNTAQQHPPM PIRSELSGKM PSIKPTALRF 300 YGSFNVTVTG ITIQNSPQCH LKFDNCIGVV VHDMRTSSPG DSPNTDGIHL QNSKDVLIHS 360 TDLACGDDCV SIQTGCSNVY IHNVNCGPGH GISIGGLGKD NTKACVSNIT VRDVVLHGTM 420 TGVRIKTWQG GSGSVKGVLF SNIQVSEVQL PIVIDQFYCD KSICKNQTSA VALSGITYEK 480 IRGTYTVKPV HFACSDALPC MDVSLTTIEL QPLKEQYHLY DPFCWQTFGE LNTPTKPPIS 540 CLQIGKPSSN RPQSDHDTC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-66 | 144 | 510 | 372 | + polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-68 | 142 | 511 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-69 | 173 | 510 | 339 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-76 | 142 | 511 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-89 | 144 | 538 | 399 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 44 | 559 | 1 | 516 | unknown [Populus trichocarpa] |
RefSeq | XP_002266600.1 | 0 | 47 | 559 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 44 | 559 | 1 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314612.1 | 0 | 178 | 559 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 47 | 559 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6e-24 | 137 | 458 | 21 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6e-24 | 137 | 458 | 21 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6e-24 | 137 | 458 | 21 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6e-24 | 137 | 458 | 21 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-21 | 220 | 461 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES800057 | 351 | 182 | 531 | 0 |
FE695613 | 286 | 249 | 534 | 0 |
EX073104 | 286 | 176 | 460 | 0 |
JG181357 | 278 | 196 | 472 | 0 |
JG181357 | 31 | 476 | 506 | 0.000008 |
Sequence Alignments (This image is cropped. Click for full image.) |
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