| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.010G042100.3 |
| Family | GH28 |
| Protein Properties | Length: 271 Molecular Weight: 29221.2 Isoelectric Point: 6.9926 |
| Chromosome | Chromosome/Scaffold: 10 Start: 7242963 End: 7246904 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 5 | 227 | 0 |
| KPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDMRTSSPGDSPNTDGIHLQNSKDVLIHSTDLACGDDCVSIQTGCSNVYIHNVNCGPGHGIS IGGLGKDNTKACVSNITVRDVVLHGTMTGVRIKTWQGGSGSVKGVLFSNIQVSEVQLPIVIDQFYCDKSICKNQTSAVALSGITYEKIRGTYTVKPVHFA CSDALPCMDVSLTTIELQPLKEQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 271 Download |
| MPSIKPTALR FYGSFNVTVT GITIQNSPQC HLKFDNCIGV VVHDMRTSSP GDSPNTDGIH 60 LQNSKDVLIH STDLACGDDC VSIQTGCSNV YIHNVNCGPG HGISIGGLGK DNTKACVSNI 120 TVRDVVLHGT MTGVRIKTWQ GGSGSVKGVL FSNIQVSEVQ LPIVIDQFYC DKSICKNQTS 180 AVALSGITYE KIRGTYTVKP VHFACSDALP CMDVSLTTIE LQPLKEQYHL YDPFCWQTFG 240 ELNTPTKPPI SCLQIGKPSS NRPQSDHDTC * |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03003 | PLN03003 | 4.0e-43 | 5 | 270 | 271 | + Probable polygalacturonase At3g15720 |
| PLN02188 | PLN02188 | 4.0e-43 | 6 | 222 | 221 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02218 | PLN02218 | 2.0e-53 | 6 | 222 | 218 | + polygalacturonase ADPG |
| pfam00295 | Glyco_hydro_28 | 2.0e-55 | 4 | 221 | 219 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02793 | PLN02793 | 6.0e-57 | 6 | 249 | 246 | + Probable polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 1 | 270 | 247 | 516 | unknown [Populus trichocarpa] |
| EMBL | CAN65317.1 | 0 | 1 | 270 | 119 | 388 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311773.1 | 0 | 1 | 270 | 248 | 517 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002314612.1 | 0 | 1 | 270 | 113 | 382 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525361.1 | 0 | 1 | 270 | 250 | 519 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-22 | 6 | 172 | 151 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 2e-17 | 19 | 195 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-17 | 19 | 195 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-17 | 19 | 195 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-17 | 19 | 195 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR918952 | 259 | 13 | 271 | 0 |
| EV525679 | 257 | 1 | 257 | 0 |
| ES813658 | 249 | 23 | 271 | 0 |
| CO104482 | 246 | 26 | 271 | 0 |
| FE695613 | 245 | 1 | 245 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
