Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G042100.4 |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 43500.4 Isoelectric Point: 5.7299 |
Chromosome | Chromosome/Scaffold: 10 Start: 7242963 End: 7246339 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 10 | 357 | 0 |
EACKVAASTMIVPAEYVFLVGPISFSGPYCQANIVFQLDGTIIAPTNSNVWGRGLFQWLEFTKLVGITIQGEGTIDGSGSVWWQDYPFEDPIDNESEFIV PLNNTAQQHPPMPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDMRTSSPGDSPNTDGIHLQNSKDVLIHSTDLACGDD CVSIQTGCSNVYIHNVNCGPGHGISIGGLGKDNTKACVSNITVRDVVLHGTMTGVRIKTWQGGSGSVKGVLFSNIQVSEVQLPIVIDQFYCDKSICKNQT SAVALSGITYEKIRGTYTVKPVHFACSDALPCMDVSLTTIELQPLKEQ |
Full Sequence |
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Protein Sequence Length: 401 Download |
MQAFQAAWAE ACKVAASTMI VPAEYVFLVG PISFSGPYCQ ANIVFQLDGT IIAPTNSNVW 60 GRGLFQWLEF TKLVGITIQG EGTIDGSGSV WWQDYPFEDP IDNESEFIVP LNNTAQQHPP 120 MPIRSELSGK MPSIKPTALR FYGSFNVTVT GITIQNSPQC HLKFDNCIGV VVHDMRTSSP 180 GDSPNTDGIH LQNSKDVLIH STDLACGDDC VSIQTGCSNV YIHNVNCGPG HGISIGGLGK 240 DNTKACVSNI TVRDVVLHGT MTGVRIKTWQ GGSGSVKGVL FSNIQVSEVQ LPIVIDQFYC 300 DKSICKNQTS AVALSGITYE KIRGTYTVKP VHFACSDALP CMDVSLTTIE LQPLKEQYHL 360 YDPFCWQTFG ELNTPTKPPI SCLQIGKPSS NRPQSDHDTC * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-58 | 2 | 400 | 405 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-58 | 2 | 352 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-67 | 2 | 352 | 355 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-69 | 14 | 351 | 339 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-81 | 2 | 379 | 382 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 2 | 400 | 118 | 516 | unknown [Populus trichocarpa] |
RefSeq | XP_002266600.1 | 0 | 2 | 400 | 107 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 12 | 400 | 129 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314612.1 | 0 | 19 | 400 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 12 | 400 | 131 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 61 | 302 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 5e-17 | 2 | 299 | 45 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5e-17 | 2 | 299 | 45 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5e-17 | 2 | 299 | 45 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5e-17 | 2 | 299 | 45 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES800057 | 351 | 23 | 372 | 0 |
FE695613 | 286 | 90 | 375 | 0 |
EX073104 | 286 | 17 | 301 | 0 |
JG181357 | 278 | 37 | 313 | 0 |
JG181357 | 31 | 317 | 347 | 0.000005 |
Sequence Alignments (This image is cropped. Click for full image.) |
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