Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.010G042100.5 |
Family | GH28 |
Protein Properties | Length: 369 Molecular Weight: 40229.7 Isoelectric Point: 6.1098 |
Chromosome | Chromosome/Scaffold: 10 Start: 7242963 End: 7246339 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 13 | 325 | 0 |
RTLDGTIIAPTNSNVWGRGLFQWLEFTKLVGITIQGEGTIDGSGSVWWQDYPFEDPIDNESEFIVPLNNTAQQHPPMPIRSELSGKMPSIKPTALRFYGS FNVTVTGITIQNSPQCHLKFDNCIGVVVHDMRTSSPGDSPNTDGIHLQNSKDVLIHSTDLACGDDCVSIQTGCSNVYIHNVNCGPGHGISIGGLGKDNTK ACVSNITVRDVVLHGTMTGVRIKTWQGGSGSVKGVLFSNIQVSEVQLPIVIDQFYCDKSICKNQTSAVALSGITYEKIRGTYTVKPVHFACSDALPCMDV SLTTIELQPLKEQ |
Full Sequence |
---|
Protein Sequence Length: 369 Download |
MYSLWGLFLS LVRTLDGTII APTNSNVWGR GLFQWLEFTK LVGITIQGEG TIDGSGSVWW 60 QDYPFEDPID NESEFIVPLN NTAQQHPPMP IRSELSGKMP SIKPTALRFY GSFNVTVTGI 120 TIQNSPQCHL KFDNCIGVVV HDMRTSSPGD SPNTDGIHLQ NSKDVLIHST DLACGDDCVS 180 IQTGCSNVYI HNVNCGPGHG ISIGGLGKDN TKACVSNITV RDVVLHGTMT GVRIKTWQGG 240 SGSVKGVLFS NIQVSEVQLP IVIDQFYCDK SICKNQTSAV ALSGITYEKI RGTYTVKPVH 300 FACSDALPCM DVSLTTIELQ PLKEQYHLYD PFCWQTFGEL NTPTKPPISC LQIGKPSSNR 360 PQSDHDTC* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-49 | 17 | 368 | 357 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-49 | 12 | 320 | 313 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-56 | 34 | 320 | 290 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-63 | 14 | 319 | 307 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-66 | 14 | 347 | 337 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 10 | 368 | 158 | 516 | unknown [Populus trichocarpa] |
EMBL | CAN65317.1 | 0 | 10 | 368 | 30 | 388 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 10 | 368 | 159 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314612.1 | 0 | 10 | 368 | 24 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 10 | 368 | 161 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-22 | 29 | 270 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 7e-17 | 117 | 293 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-17 | 117 | 293 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-17 | 117 | 293 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-17 | 117 | 293 | 113 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |