y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G042100.7 |
Family | GH28 |
Protein Properties | Length: 408 Molecular Weight: 44273.4 Isoelectric Point: 8.8709 |
Chromosome | Chromosome/Scaffold: 10 Start: 7244083 End: 7246904 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 126 | 385 | 0 |
EACKVAASTMIVPAEYVFLVGPISFSGPYCQANIVFQLDGTIIAPTNSNVWGRGLFQWLEFTKLVGITIQGEGTIDGSGSVWWQDYPFEDPIDNESEFIV PLNNTAQQHPPMPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDMRTSSPGDSPNTDGIHLQNSKDVLIHSTDLACGDD CVSIQTGCSNVYIHNVNCGPGHGISIGGLGKDNTKACVSNITVRDVVLHGTMTGVRIKTW |
Full Sequence |
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Protein Sequence Length: 408 Download |
MVNMSGLSFR CLTFMLFIAF LVWSSSFHTC IARRGKHWRE SRGNSASLAK KKGKNQGNSR 60 QKHHNGVSKP KPPPPKAPSL PPPPKDDAPA PSPPQKSSTT FNVLDFGAKG NGKSDDTKAF 120 QAAWAEACKV AASTMIVPAE YVFLVGPISF SGPYCQANIV FQLDGTIIAP TNSNVWGRGL 180 FQWLEFTKLV GITIQGEGTI DGSGSVWWQD YPFEDPIDNE SEFIVPLNNT AQQHPPMPIR 240 SELSGKMPSI KPTALRFYGS FNVTVTGITI QNSPQCHLKF DNCIGVVVHD MRTSSPGDSP 300 NTDGIHLQNS KDVLIHSTDL ACGDDCVSIQ TGCSNVYIHN VNCGPGHGIS IGGLGKDNTK 360 ACVSNITVRD VVLHGTMTGV RIKTWQVFFI SAIPYYSKFV KRNQQSS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 8.0e-47 | 99 | 386 | 292 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 4.0e-49 | 101 | 386 | 289 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-50 | 99 | 386 | 291 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-51 | 99 | 386 | 289 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-55 | 101 | 386 | 288 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 386 | 1 | 386 | unknown [Populus trichocarpa] |
RefSeq | XP_002266600.1 | 0 | 4 | 386 | 1 | 375 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 386 | 1 | 387 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314612.1 | 0 | 135 | 386 | 1 | 252 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 4 | 386 | 1 | 389 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9e-24 | 94 | 332 | 21 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9e-24 | 94 | 332 | 21 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9e-24 | 94 | 332 | 21 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9e-24 | 94 | 332 | 21 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000001 | 177 | 384 | 96 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |