Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G051800.2 |
Family | PL1 |
Protein Properties | Length: 334 Molecular Weight: 36953.1 Isoelectric Point: 7.7731 |
Chromosome | Chromosome/Scaffold: 10 Start: 8232370 End: 8233743 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 116 | 321 | 0 |
IQDEPLWITFARDMVIRLKEELIMNSFKTIDGRGANVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPSHYGWRTISDGDGVSIFGGSQVWVD HCSLSNCNDGLIDAIHGSTAITISNSYFTRHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWKMYAIGGSAAPTINSQ GNRFLA |
Full Sequence |
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Protein Sequence Length: 334 Download |
MAIPLSLSVL LLILAPSFIS CLPVQDPELV VEEVHRSINA SRRNLAFLSC GTGNPIDDCW 60 RCDPNWEKNR QRLANCAIGF GKNAIGGRDG KIYVVTDSGH DDPVNPKPGT LRHAVIQDEP 120 LWITFARDMV IRLKEELIMN SFKTIDGRGA NVHIAGGPCI TIQYVTNIII HGINIHDCKQ 180 GGNAYVRDSP SHYGWRTISD GDGVSIFGGS QVWVDHCSLS NCNDGLIDAI HGSTAITISN 240 SYFTRHNKVM LLGHSDSYKQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH VVNNDYTHWK 300 MYAIGGSAAP TINSQGNRFL APNDRFKKEV ILI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-27 | 141 | 319 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-72 | 134 | 319 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-78 | 128 | 323 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK94358.1 | 0 | 1 | 330 | 1 | 330 | unknown [Populus trichocarpa] |
DDBJ | BAB59066.1 | 0 | 20 | 330 | 27 | 337 | pectate lyase [Salix gilgiana] |
RefSeq | XP_002311747.1 | 0 | 1 | 330 | 1 | 330 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314576.1 | 0 | 21 | 330 | 21 | 330 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 15 | 330 | 16 | 331 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 54 | 330 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 54 | 330 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-17 | 129 | 321 | 56 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.00000000000004 | 183 | 323 | 120 | 291 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.00000000000004 | 183 | 323 | 120 | 291 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |