| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.010G062900.2 |
| Family | GH14 |
| Protein Properties | Length: 489 Molecular Weight: 54157.7 Isoelectric Point: 6.3566 |
| Chromosome | Chromosome/Scaffold: 10 Start: 9097065 End: 9100041 |
| Description | beta-amylase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 122 | 483 | 0 |
| YVMMPLDSVTMGNTLNRKKAMNASLQALKSAGVEGLMVDVWWGLVERDAPGVYNWGGYTELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWAVEE IDKDQDLAYTDQWGRRNHEYISLGCDTLPVLKGRTPVQCYSDFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWRFPGIGAFQCYDKYML SSLKAAAEAAGKPEWGSTGPTDAGEYNNWPEDTQFFRKEGGGWTSPYGEFFLTWYSQMLLDHGERILSSAKATFENIGVKISVKIAGIHWHYGTRSHAPE LTAGYYNTRFRDGYLPIARMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALATREL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 489 Download |
| MAMNITFQIG ALAGTPIQAE SITSASTGSD SSAAAAWKTP IPSIRCKIIK PETIEQKSQP 60 TSPCRSPILS GSNGIRPDLS VACRAFATET LEFMTLDESK AAEEEKMYKE GKTEKEKGVP 120 VYVMMPLDSV TMGNTLNRKK AMNASLQALK SAGVEGLMVD VWWGLVERDA PGVYNWGGYT 180 ELLEMAKRHG LKVQAVMSFH QCGGNVGDSC TIPLPKWAVE EIDKDQDLAY TDQWGRRNHE 240 YISLGCDTLP VLKGRTPVQC YSDFMRAFRD NFKHLLGDTI VEIQVGMGPA GELRYPSYPE 300 QNGTWRFPGI GAFQCYDKYM LSSLKAAAEA AGKPEWGSTG PTDAGEYNNW PEDTQFFRKE 360 GGGWTSPYGE FFLTWYSQML LDHGERILSS AKATFENIGV KISVKIAGIH WHYGTRSHAP 420 ELTAGYYNTR FRDGYLPIAR MLARHGAIFN FTCIEMRDHE QPQDALCAPE KLVRQVALAT 480 RELSILCM* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02161 | PLN02161 | 2.0e-129 | 113 | 485 | 383 | + beta-amylase | ||
| pfam01373 | Glyco_hydro_14 | 2.0e-129 | 122 | 485 | 374 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
| PLN02801 | PLN02801 | 4.0e-167 | 119 | 476 | 359 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 1 | 485 | 485 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 0 | 56 | 481 | 426 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN71375.1 | 0 | 3 | 485 | 1 | 471 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002285569.1 | 0 | 2 | 485 | 3 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311706.1 | 0 | 3 | 485 | 1 | 461 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002314522.1 | 0 | 113 | 485 | 1 | 373 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518196.1 | 0 | 1 | 485 | 1 | 473 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1b1y_A | 0 | 119 | 487 | 6 | 373 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 1ukp_D | 0 | 119 | 476 | 12 | 366 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_C | 0 | 119 | 476 | 12 | 366 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_B | 0 | 119 | 476 | 12 | 366 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_A | 0 | 119 | 476 | 12 | 366 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO779314 | 309 | 177 | 485 | 0 |
| EG518392 | 307 | 133 | 439 | 0 |
| EC948247 | 293 | 176 | 468 | 0 |
| FE701884 | 294 | 187 | 480 | 0 |
| DY287950 | 381 | 80 | 451 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
