| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.010G129300.2 |
| Family | CBM57 |
| Protein Properties | Length: 537 Molecular Weight: 58697.9 Isoelectric Point: 4.5358 |
| Chromosome | Chromosome/Scaffold: 10 Start: 14447399 End: 14455704 |
| Description | Di-glucose binding protein with Leucine-rich repeat domain |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM57 | 210 | 355 | 1e-22 |
| NDTDDFGRAWQSDSVLRTLNTTKIIHSLSTRETITGTNQPPNFFPAKLYQTAVTGNGILEYALSVDAKLDYVLWFHFAEIDSSVKQKAERVFDVVVNEKN VKRVDVFEEVGSFAAYSLSYTVHNLSSTVLTVKFVPVIGAPIVSGI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 537 Download |
| MSLLFFIFSL PLLLSPSLSF SFGNASYFID CGGSTNTTDP FNTIWLSDRY FTGGAISVVS 60 EPLHFRYPQE KNLRFFPLSS GKKNCYILPL PSGRYYFRTF TVYDNYDGKS HSPSFDASVE 120 GTVVFSWRSP WPENLARDGA YSDLFAFVKD GEADVCFYSI ATDPPVIGSL EVRQIDPSSY 180 DSATIGDKFI LVNYGRLSCG SNQWGPGFSN DTDDFGRAWQ SDSVLRTLNT TKIIHSLSTR 240 ETITGTNQPP NFFPAKLYQT AVTGNGILEY ALSVDAKLDY VLWFHFAEID SSVKQKAERV 300 FDVVVNEKNV KRVDVFEEVG SFAAYSLSYT VHNLSSTVLT VKFVPVIGAP IVSGIENYAL 360 IPNDLSTAPE QVVAMRALKE SLRVPDRMGW NGDPCAPTSW DAWEGVTCHP NKDETALVIS 420 QIDLGSQGLK GSISEQITLL SNLVTLNLST NSLGGTLPSG LGQQSLVRLD LSNNQFSGPI 480 PESLALATHL QLVMLNGNSL EGRVPEELYS IGVHGGAIDN GCQEKQVPEA EVLDAS* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam11721 | Malectin | 0.003 | 26 | 185 | 179 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| PLN00113 | PLN00113 | 2.0e-7 | 422 | 510 | 89 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 3.0e-12 | 196 | 355 | 175 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| pfam12819 | Malectin_like | 1.0e-57 | 29 | 358 | 352 | + Carbohydrate-binding protein of the ER. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. | ||
| PLN03150 | PLN03150 | 2.0e-104 | 29 | 515 | 499 | + hypothetical protein; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG50525.1 | 0 | 17 | 519 | 21 | 500 | AC084221_7 hypothetical protein [Arabidopsis thaliana] |
| RefSeq | NP_564237.2 | 0 | 17 | 519 | 21 | 523 | leucine-rich repeat protein-related [Arabidopsis thaliana] |
| RefSeq | XP_002281668.1 | 0 | 24 | 519 | 28 | 522 | PREDICTED: similar to leucine-rich repeat protein-related [Vitis vinifera] |
| RefSeq | XP_002315959.1 | 0 | 256 | 536 | 1 | 281 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524408.1 | 0 | 26 | 519 | 23 | 517 | serine-threonine protein kinase, plant-type, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4hq1_A | 0.000000006 | 374 | 508 | 31 | 156 | A Chain A, Crystal Structure Of The Cellulase Cel9m Of C. Cellulolyticum |
| PDB | 4hq1_A | 0.0001 | 424 | 513 | 216 | 304 | A Chain A, Crystal Structure Of The Cellulase Cel9m Of C. Cellulolyticum |
| PDB | 3rgz_A | 0.000003 | 418 | 508 | 395 | 486 | A Chain A, Crystal Structure Of The Cellulase Cel9m Of C. Cellulolyticum |
| PDB | 3rgz_A | 0.00002 | 422 | 506 | 637 | 722 | A Chain A, Crystal Structure Of The Cellulase Cel9m Of C. Cellulolyticum |
