Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.010G152000.1 |
Family | GH28 |
Protein Properties | Length: 483 Molecular Weight: 52142.5 Isoelectric Point: 4.4409 |
Chromosome | Chromosome/Scaffold: 10 Start: 15998405 End: 16001186 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 115 | 439 | 0 |
CGVESGVILAPSGYSFMITSTIFSGPCKPGIVFQVDGCLMPPDGPDSWPEKDSTQQWLVFYRLDGMTLTGEGTIEGNGEKWWDLPCKPHRGPNGSTSKGP CVSPALIRFFMSSNLEVSGLKIQNSPQFHMKFDGCEGVLIKKLSISSPKLSPNTDGIHIENTKAVGIYDSFISNGDDCISIGTGCSNVDIDGLTCGPSHG ISIGSLGVHNSQACVSNITVRNTIIKESDDGLRIKTWQGGTGCVSDINFENIQMENVRNCIIIDQYYCLSKACQNETSAVYVTGVTYRNIKGTYDVRTPP IHFACSDTVACTNILLSEVELLPEE |
Full Sequence |
---|
Protein Sequence Length: 483 Download |
MEIIRGILAI CIAVSFLLYN SSNVEGRSRY HKPKNKSSKN PEPPVSPTPY NAPDPQNPTA 60 PSSPSNSPSI PSDPYPNDPG NTSSDYIFNV MDYGAVGDGS TDDTNAFRQA WKEACGVESG 120 VILAPSGYSF MITSTIFSGP CKPGIVFQVD GCLMPPDGPD SWPEKDSTQQ WLVFYRLDGM 180 TLTGEGTIEG NGEKWWDLPC KPHRGPNGST SKGPCVSPAL IRFFMSSNLE VSGLKIQNSP 240 QFHMKFDGCE GVLIKKLSIS SPKLSPNTDG IHIENTKAVG IYDSFISNGD DCISIGTGCS 300 NVDIDGLTCG PSHGISIGSL GVHNSQACVS NITVRNTIIK ESDDGLRIKT WQGGTGCVSD 360 INFENIQMEN VRNCIIIDQY YCLSKACQNE TSAVYVTGVT YRNIKGTYDV RTPPIHFACS 420 DTVACTNILL SEVELLPEEG ELVDDPFCWN AYGTEETVTI PPINCLREGE PEGLREISSY 480 GC* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-67 | 88 | 466 | 386 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 6.0e-68 | 87 | 428 | 346 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-79 | 121 | 428 | 308 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-85 | 89 | 428 | 344 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-98 | 83 | 462 | 383 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 1 | 482 | 1 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 1 | 482 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 1 | 482 | 1 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 482 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 482 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-22 | 149 | 435 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-22 | 149 | 435 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-22 | 149 | 435 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-22 | 149 | 435 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-22 | 149 | 435 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |