Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G168100.2 |
Family | AA3 |
Protein Properties | Length: 542 Molecular Weight: 59441.9 Isoelectric Point: 5.835 |
Chromosome | Chromosome/Scaffold: 10 Start: 17070677 End: 17072830 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 54 | 529 | 0 |
SGKSFDYIVVGGGTAGCPLAATLSERFSVLVIERGGSPYGNPLVSDKMYYGFPLIQPDEFSSVAQSFVSKDGVESHRGRVLGGSSAINGGFYSRASDDFV KTVGWDEELVKEAYEWVESNIVFKPELTIWQSVVELGLLEAGILPYNGFSMEHIEGTKIGGTLFDEYGIRHTSADLLEIGNPENIIVLLNATVKNIIFHG NESMVRGVRFIKSDGSTSQTYEAYLNQPENSSSWGDVILSAGALGSPQILLLSGIGPEKHLRNFGIPLVLDLKGVGKEMKDNPGIALLADTKPTHRFPDA PQVAGITKDMKFIVEGGIVPISFNATRMPIAIKLAFPESKGTLELNSTDPRQNPAVEFHYLEKEKDLEECTKMVQLLNKIAGSRSVVLFLGKEPQNNLMS SQDELRNFCKKNVRTYYHYHGGSTVGSVVDDDYKVHGIKGLRVIDGSTFLESPGTNPMATVLMLGRYQGIKIVRER |
Full Sequence |
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Protein Sequence Length: 542 Download |
METGRTRMEL TLIIYRYVLF TAFLFLVLVK LSHSFPSTQG KNLPYLTSDV EEVSGKSFDY 60 IVVGGGTAGC PLAATLSERF SVLVIERGGS PYGNPLVSDK MYYGFPLIQP DEFSSVAQSF 120 VSKDGVESHR GRVLGGSSAI NGGFYSRASD DFVKTVGWDE ELVKEAYEWV ESNIVFKPEL 180 TIWQSVVELG LLEAGILPYN GFSMEHIEGT KIGGTLFDEY GIRHTSADLL EIGNPENIIV 240 LLNATVKNII FHGNESMVRG VRFIKSDGST SQTYEAYLNQ PENSSSWGDV ILSAGALGSP 300 QILLLSGIGP EKHLRNFGIP LVLDLKGVGK EMKDNPGIAL LADTKPTHRF PDAPQVAGIT 360 KDMKFIVEGG IVPISFNATR MPIAIKLAFP ESKGTLELNS TDPRQNPAVE FHYLEKEKDL 420 EECTKMVQLL NKIAGSRSVV LFLGKEPQNN LMSSQDELRN FCKKNVRTYY HYHGGSTVGS 480 VVDDDYKVHG IKGLRVIDGS TFLESPGTNP MATVLMLGRY QGIKIVRERQ NTSVSCSPPQ 540 L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05199 | GMC_oxred_C | 3.0e-30 | 390 | 518 | 136 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR03970 | Rv0697 | 1.0e-37 | 59 | 518 | 509 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
TIGR01810 | betA | 1.0e-47 | 59 | 518 | 546 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 3.0e-52 | 54 | 519 | 547 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 1.0e-157 | 34 | 529 | 561 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_563939.1 | 0 | 23 | 529 | 4 | 503 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | XP_002312249.1 | 0 | 46 | 537 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315047.1 | 0 | 40 | 528 | 1 | 489 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315048.1 | 0 | 8 | 534 | 1 | 531 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522448.1 | 0 | 8 | 534 | 1 | 530 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 57 | 530 | 26 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 57 | 530 | 26 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 57 | 530 | 26 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 57 | 530 | 26 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 57 | 530 | 26 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |