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Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G183500.2 |
Family | AA1 |
Protein Properties | Length: 544 Molecular Weight: 59815.5 Isoelectric Point: 7.786 |
Chromosome | Chromosome/Scaffold: 10 Start: 18075601 End: 18078917 |
Description | laccase 12 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 4 | 526 | 0 |
IQATPVKRLCKTQNSITVNGMFPGPTLEVNNGDTLVVNVVNKARYNVTIHWHGIRQMRTGWADGPEFVTQCPIRPGGSYTYRFTIQGQEGTLWWHAHSSW LRATVYGALIIHPKEGSSYPFSKQPKRETAILLGEWWNANPIDVVRESTRTGGTPNSSDAYTINGQPGDLYNCSSQDTVIVPIDSGETNLLRVVNSALNQ PLFFTVANHKLTVVGADASYVKPFTTSVLMLGPGQTTDVLISGDQNPSRYYMAARAYQSAQNAPFDNTTTTAILEYKSSPCAAKNCSSNKPIMPPLPTFN DTATVTAFTSSFKSTDKTFVPTDIDESLFFTVGLGLNPCPPNFNKSSQCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHQRIQGVFTTDFPANPPRKFDY TGNVSRSLFTPVPGTKLYRLKYGSRVQIVLQDTSIVTSENHPIHLHGYDFYIIAQGFGNYNPRTDPSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGVW LMHCHLDVHITWGLATAFLVENG |
Full Sequence |
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Protein Sequence Length: 544 Download |
MVQIQATPVK RLCKTQNSIT VNGMFPGPTL EVNNGDTLVV NVVNKARYNV TIHWHGIRQM 60 RTGWADGPEF VTQCPIRPGG SYTYRFTIQG QEGTLWWHAH SSWLRATVYG ALIIHPKEGS 120 SYPFSKQPKR ETAILLGEWW NANPIDVVRE STRTGGTPNS SDAYTINGQP GDLYNCSSQD 180 TVIVPIDSGE TNLLRVVNSA LNQPLFFTVA NHKLTVVGAD ASYVKPFTTS VLMLGPGQTT 240 DVLISGDQNP SRYYMAARAY QSAQNAPFDN TTTTAILEYK SSPCAAKNCS SNKPIMPPLP 300 TFNDTATVTA FTSSFKSTDK TFVPTDIDES LFFTVGLGLN PCPPNFNKSS QCQGPNGTRF 360 TASMNNVSFV LPSNFSLLQA HHQRIQGVFT TDFPANPPRK FDYTGNVSRS LFTPVPGTKL 420 YRLKYGSRVQ IVLQDTSIVT SENHPIHLHG YDFYIIAQGF GNYNPRTDPS KFNLVDPPLR 480 NTVAVPVNGW AVIRFVADNP GVWLMHCHLD VHITWGLATA FLVENGVGEL QSIESPPEDL 540 PLC* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07732 | Cu-oxidase_3 | 5.0e-56 | 3 | 119 | 119 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
PLN02191 | PLN02191 | 1.0e-71 | 13 | 521 | 550 | + L-ascorbate oxidase | ||
PLN02604 | PLN02604 | 3.0e-82 | 13 | 532 | 560 | + oxidoreductase | ||
TIGR03388 | ascorbase | 8.0e-96 | 13 | 540 | 565 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
TIGR03389 | laccase | 0 | 4 | 543 | 545 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI25418.1 | 0 | 4 | 543 | 40 | 577 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273875.1 | 0 | 4 | 543 | 40 | 576 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312187.1 | 0 | 4 | 543 | 23 | 562 | laccase 90b [Populus trichocarpa] |
RefSeq | XP_002315130.1 | 0 | 4 | 543 | 43 | 582 | laccase 90d [Populus trichocarpa] |
RefSeq | XP_002520797.1 | 0 | 4 | 543 | 43 | 581 | laccase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 13 | 521 | 19 | 521 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 1asq_A | 0 | 13 | 521 | 19 | 521 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 1asp_B | 0 | 13 | 521 | 19 | 521 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 1asp_A | 0 | 13 | 521 | 19 | 521 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 1aso_B | 0 | 13 | 521 | 19 | 521 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY297248 | 343 | 181 | 522 | 0 |
HO797675 | 509 | 42 | 544 | 0 |
EX658195 | 271 | 4 | 274 | 0 |
DW243722 | 282 | 223 | 504 | 0 |
EX274037 | 311 | 215 | 525 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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