Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G229000.2 |
Family | PL1 |
Protein Properties | Length: 352 Molecular Weight: 37432.9 Isoelectric Point: 6.6063 |
Chromosome | Chromosome/Scaffold: 10 Start: 21147944 End: 21152407 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 2 | 193 | 0 |
VIKLKHELIFNSYKTIDGRGANVHITGNGCITLQYVSHIIIHNIHVHHCKPSGNTNIAASPTHVGWRGRSDGDGISIFGAQKIWIDHCSLSYCTDGLIDA IMGSTGITISNNHFTHHDEVMLLGHDDKYALDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTA |
Full Sequence |
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Protein Sequence Length: 352 Download |
MVIKLKHELI FNSYKTIDGR GANVHITGNG CITLQYVSHI IIHNIHVHHC KPSGNTNIAA 60 SPTHVGWRGR SDGDGISIFG AQKIWIDHCS LSYCTDGLID AIMGSTGITI SNNHFTHHDE 120 VMLLGHDDKY ALDTGMQVTI AFNHFGQGLV QRMPRCRRGY IHVVNNDFTA WEMYAIGGSA 180 NPTINSQGNR YTAPTDDNAK EVTKRVDTNE GDWAGWNWRT DGDIMVNGAF FVPSGGGLSA 240 QYSKASSVEP KSAGLIQQLT LNAGVFGDPR DDSGSISTPG FSGGGTSSTT NTGVQGSGSS 300 GGGGDYFGMI FGSGAPPPTS TSLIFLSLLI ILILCTITNH VALESFPLLS L* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-20 | 13 | 209 | 215 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-59 | 6 | 191 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-67 | 1 | 194 | 205 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ87025.1 | 0 | 1 | 333 | 139 | 492 | pectate lyase-like protein [Brassica napus] |
GenBank | ABD47739.1 | 0 | 15 | 342 | 1 | 329 | pectate lyase [Eucalyptus globulus subsp. globulus] |
RefSeq | XP_002268818.1 | 0 | 1 | 317 | 147 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 1 | 270 | 146 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 1 | 317 | 147 | 462 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 1 | 265 | 76 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 1 | 265 | 76 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1jta_A | 9e-16 | 38 | 264 | 114 | 357 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1jrg_B | 9e-16 | 38 | 264 | 114 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
PDB | 1jrg_A | 9e-16 | 38 | 264 | 114 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |