y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G229000.3 |
Family | PL1 |
Protein Properties | Length: 459 Molecular Weight: 50618.3 Isoelectric Point: 7.2609 |
Chromosome | Chromosome/Scaffold: 10 Start: 21149104 End: 21153144 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 139 | 338 | 0 |
WIIFSSNMVIKLKHELIFNSYKTIDGRGANVHITGNGCITLQYVSHIIIHNIHVHHCKPSGNTNIAASPTHVGWRGRSDGDGISIFGAQKIWIDHCSLSY CTDGLIDAIMGSTGITISNNHFTHHDEVMLLGHDDKYALDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTA |
Full Sequence |
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Protein Sequence Length: 459 Download |
MKLPSIYILL ICLFTSFTRF IVETTAFNLT LPHQHPDPEA VAEDVKRRVN ASLSRRHLLS 60 IQEKDQCQTG NPIDDCWRCN SNWANNRQRL ADCAIGFGQG SLGGRGGQIY VVTDSSDYDP 120 ANPKPGTLRY GVIQDQPLWI IFSSNMVIKL KHELIFNSYK TIDGRGANVH ITGNGCITLQ 180 YVSHIIIHNI HVHHCKPSGN TNIAASPTHV GWRGRSDGDG ISIFGAQKIW IDHCSLSYCT 240 DGLIDAIMGS TGITISNNHF THHDEVMLLG HDDKYALDTG MQVTIAFNHF GQGLVQRMPR 300 CRRGYIHVVN NDFTAWEMYA IGGSANPTIN SQGNRYTAPT DDNAKEVTKR VDTNEGDWAG 360 WNWRTDGDIM VNGAFFVPSG GGLSAQYSKA SSVEPKSAGL IQQLTLNAGV FGDPRFICLC 420 QTEVSKSGGV KKNELSCKVW LFPLEIILVD PHRAKDIC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-21 | 158 | 354 | 215 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-61 | 151 | 336 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-69 | 145 | 339 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ87025.1 | 0 | 26 | 415 | 22 | 409 | pectate lyase-like protein [Brassica napus] |
RefSeq | NP_196051.2 | 0 | 6 | 414 | 17 | 438 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 3 | 415 | 2 | 416 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 1 | 415 | 1 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 1 | 415 | 2 | 416 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 71 | 410 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 71 | 410 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-17 | 90 | 336 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.000000000000001 | 96 | 409 | 22 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.000000000000001 | 96 | 409 | 22 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY286386 | 378 | 8 | 382 | 0 |
DY293469 | 343 | 8 | 349 | 0 |
CK243724 | 323 | 33 | 352 | 0 |
DY265324 | 289 | 47 | 335 | 0 |
FC911966 | 281 | 55 | 335 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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