Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G248200.1 |
Family | GH28 |
Protein Properties | Length: 378 Molecular Weight: 39748.9 Isoelectric Point: 7.7975 |
Chromosome | Chromosome/Scaffold: 10 Start: 22170343 End: 22171926 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 36 | 366 | 0 |
WAQACSSISPSTIYVPPGRFFLQNVEFKGPCKNKAIVVRIDGTLLAPTDYRIIGNAGNWILFQNVDGVTVSGGVLDGHGSGLWDCKRSGKNCPSGATTLR FSNSNNIVISGLTSLNSQMFHIVINGCNSVKIQGVRITASGNSPNTDGIHVQLSSNITILSSKIGTGDDCVSIGAGTTNLWIENVVCGPGHGISIGSLGK DLNEPGVQNVTAKTITFIGTQNGLRIKSWGRPSDGFVRNVLFQHAAMTNVQNPIVIDQNYCPDNINCPGQASGVKISDVIYQDIHGTSATQVAVRFDCSI KFPCTGIKMEDVKLTYKNQPAGASCNNADGT |
Full Sequence |
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Protein Sequence Length: 378 Download |
MVFTSYLAIA EQHNVLSYGA KPDGGTDSTT AFLAAWAQAC SSISPSTIYV PPGRFFLQNV 60 EFKGPCKNKA IVVRIDGTLL APTDYRIIGN AGNWILFQNV DGVTVSGGVL DGHGSGLWDC 120 KRSGKNCPSG ATTLRFSNSN NIVISGLTSL NSQMFHIVIN GCNSVKIQGV RITASGNSPN 180 TDGIHVQLSS NITILSSKIG TGDDCVSIGA GTTNLWIENV VCGPGHGISI GSLGKDLNEP 240 GVQNVTAKTI TFIGTQNGLR IKSWGRPSDG FVRNVLFQHA AMTNVQNPIV IDQNYCPDNI 300 NCPGQASGVK ISDVIYQDIH GTSATQVAVR FDCSIKFPCT GIKMEDVKLT YKNQPAGASC 360 NNADGTTSGV IQPNSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 8.0e-89 | 15 | 377 | 371 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-90 | 40 | 363 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-92 | 14 | 373 | 367 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-107 | 14 | 376 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-144 | 14 | 377 | 365 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAH18935.1 | 0 | 3 | 377 | 24 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002309718.1 | 0 | 1 | 377 | 16 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529089.1 | 0 | 1 | 377 | 17 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 1 | 377 | 17 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 3 | 377 | 17 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-20 | 120 | 350 | 143 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 4e-19 | 14 | 349 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 8e-18 | 106 | 360 | 80 | 339 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 8e-18 | 106 | 360 | 80 | 339 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 8e-18 | 106 | 360 | 80 | 339 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 324 | 4 | 326 | 0 |
JZ191937 | 299 | 79 | 377 | 0 |
JZ194028 | 289 | 72 | 360 | 0 |
JZ193571 | 288 | 10 | 297 | 0 |
JZ192826 | 286 | 77 | 362 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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