Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.011G008000.1 |
Family | PL1 |
Protein Properties | Length: 393 Molecular Weight: 42951.3 Isoelectric Point: 9.6523 |
Chromosome | Chromosome/Scaffold: 11 Start: 594468 End: 596093 |
Description | root hair specific 14 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 115 | 313 | 0 |
IVFAKDMVITLRNELIMNSYKTIDGRGAKVEIAYGPCITIQGVSHVIIHGISIHDCKPGKSGRVISTPTHVGKRGGSDGDAIAIFASSNVWIDHCYLARC TDGLIDVIHASTSITISNNYFSQHDKVMLLGHNDGYTADKVMKVTIAFNRFGSGLIERMPRVRFGYAHVANNRYDEWQMYAIGGSANPTIFSEGNYFLA |
Full Sequence |
---|
Protein Sequence Length: 393 Download |
MASPAPLILL AFLVPYLCLT LPAYALDYKH YKPLSSYLPS NIKKTLNTID SCWRAQSNWA 60 NNRRALADCA VGFGRGAMGG KYGAIYVVTT PNDDPVNPKP GMLRYGAIQS KPLWIVFAKD 120 MVITLRNELI MNSYKTIDGR GAKVEIAYGP CITIQGVSHV IIHGISIHDC KPGKSGRVIS 180 TPTHVGKRGG SDGDAIAIFA SSNVWIDHCY LARCTDGLID VIHASTSITI SNNYFSQHDK 240 VMLLGHNDGY TADKVMKVTI AFNRFGSGLI ERMPRVRFGY AHVANNRYDE WQMYAIGGSA 300 NPTIFSEGNY FLARNGNSKQ VTKREAKNGW TNWKWRSSKD VFMNGAYFVQ SGYGSCAPLY 360 SKTQSFTVAP GSLVPALTSG AGPLNCFRGQ PC* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-25 | 194 | 311 | 130 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-60 | 128 | 311 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-72 | 120 | 313 | 205 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 1 | 392 | 1 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 1 | 392 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 1 | 392 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 392 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 1 | 392 | 1 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 47 | 382 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 47 | 382 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-19 | 65 | 313 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000002 | 139 | 311 | 140 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000002 | 126 | 315 | 73 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |