y
Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.011G008100.1 |
Family | PL1 |
Protein Properties | Length: 394 Molecular Weight: 43096.9 Isoelectric Point: 6.8346 |
Chromosome | Chromosome/Scaffold: 11 Start: 599373 End: 601338 |
Description | root hair specific 14 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 113 | 312 | 0 |
WITFDKDMVIKLENELMINSFKTIDGRGSNVEITDGPCLKIEGVSHVIIHGISIHDCKPGKRGLVRSSPTHVGQRRGADGDAISIFASSNIWIDHCYLAR CIDGLIDVIHASTAVTISNNYFAQHDKVMLLGHNDEYTADKVMKVTVAFNHFGPGLIERMPRVRFGYAHVANNRYDEWQMYAIGGSAGSTIFSEGNYFIA |
Full Sequence |
---|
Protein Sequence Length: 394 Download |
MALLAYVLLL SFLATLFAST LQDDSLGYKP KPLSSYLPSN YKKVLNTIDS CWRTESNWAT 60 DRRALADCAV GFGQAAIGGK YGKTYVVTTP DDDPTDPKPG TLRYGAIQTE PLWITFDKDM 120 VIKLENELMI NSFKTIDGRG SNVEITDGPC LKIEGVSHVI IHGISIHDCK PGKRGLVRSS 180 PTHVGQRRGA DGDAISIFAS SNIWIDHCYL ARCIDGLIDV IHASTAVTIS NNYFAQHDKV 240 MLLGHNDEYT ADKVMKVTVA FNHFGPGLIE RMPRVRFGYA HVANNRYDEW QMYAIGGSAG 300 STIFSEGNYF IAPDISYAKE VTKREADGGW KNWKWRSSSK DVFMNGAYFV PSGYGSCAPL 360 YSEAQSFVVF PGTMVPSLTS DAGPLSCVVG QAC* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-27 | 183 | 310 | 140 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-57 | 109 | 310 | 213 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-73 | 119 | 314 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 1 | 393 | 1 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317132.1 | 0 | 1 | 393 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 393 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518441.1 | 0 | 16 | 393 | 1 | 377 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002518442.1 | 0 | 31 | 393 | 29 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 46 | 386 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 46 | 386 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-20 | 114 | 312 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 5e-17 | 128 | 310 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 2e-16 | 113 | 315 | 64 | 281 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |