Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.011G044300.2 |
Family | GH35 |
Protein Properties | Length: 818 Molecular Weight: 91042.6 Isoelectric Point: 5.6544 |
Chromosome | Chromosome/Scaffold: 11 Start: 3756775 End: 3765905 |
Description | beta-galactosidase 8 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 11 | 314 | 0 |
LVIDGKRRVLQSGSIHYPRTTPEVWPEIIRKSKEGGLDVIETYVFWNYHEPVRGQYYFEGRFDLVRFVKTVQEAGLFVHLRIGPYACAEWNYGGFPLWLH FIPGVQFRTSNDIFKNAMKSFLTKIVDLMKDDNLFASQGGPIILAQVENEYGNVQWAYGVGGELYVKWAAETAISLNTTVPWVMCVQEDAPDPVINTCNG FYCDQFTPNSPSKPKMWTENYSGWFLAFGYAVPYRPVEDLAFAVARFFEYGGSFQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLR DLHS |
Full Sequence |
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Protein Sequence Length: 818 Download |
MTSVTYDHKA LVIDGKRRVL QSGSIHYPRT TPEVWPEIIR KSKEGGLDVI ETYVFWNYHE 60 PVRGQYYFEG RFDLVRFVKT VQEAGLFVHL RIGPYACAEW NYGGFPLWLH FIPGVQFRTS 120 NDIFKNAMKS FLTKIVDLMK DDNLFASQGG PIILAQVENE YGNVQWAYGV GGELYVKWAA 180 ETAISLNTTV PWVMCVQEDA PDPVINTCNG FYCDQFTPNS PSKPKMWTEN YSGWFLAFGY 240 AVPYRPVEDL AFAVARFFEY GGSFQNYYMY FGGTNFGRTA GGPLVATSYD YDAPIDEYGF 300 IRQPKWGHLR DLHSAIKQCE EYLVSSDPVH QQLGNKLEAH VYYKHSNDCA AFLANYDSGS 360 DANVTFNGNT YFLPAWSVSI LADCKNVIFN TAKVVTQRHI GDALFSRSTT VDGNLVAASP 420 WSWYKEEVGI WGNNSFTKPG LLEQINTTKD TSDFLWYSTS LYVEAGQDKE HLLNIESLGH 480 AALVFVNKRF VAFGYGNHDD ASFSLTREIS LEEGNNTLDV LSMLIGVQNY GPWFDVQGAG 540 IHSVFLVDLH KSKKDLSSGK WTYQVGLEGE YLGLDNVSLA NSSLWSQGTS LPVNKSLIWY 600 KATIIAPEGN GPLALNLASM GKGQAWINGQ SIGRYWSAYL SPSAGCTDNC DYRGAYNSFK 660 CQKKCGQPAQ TLYHIPRTWV HPGENLLVLH EELGGDPSQI SLLTRTGQDI CSIVSEDDPP 720 PADSWKPNLE FMSQSPEVRL TCEHGWHIAA INFASFGTPE GKCGTFTPGN CHADMLTIVQ 780 KACIGHERCS IPISAAKLGD PCPGVVKRFV VEALCSE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02449 | Glyco_hydro_42 | 2.0e-5 | 26 | 162 | 155 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
pfam02140 | Gal_Lectin | 4.0e-19 | 740 | 815 | 81 | + Galactose binding lectin domain. | ||
COG1874 | LacA | 2.0e-20 | 4 | 306 | 354 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam01301 | Glyco_hydro_35 | 3.0e-153 | 10 | 316 | 322 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 3 | 816 | 825 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0004565 | beta-galactosidase activity |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
GO:0009341 | beta-galactosidase complex |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK24373.1 | 0 | 3 | 816 | 30 | 861 | unknown [Picea sitchensis] |
EMBL | CBI16297.1 | 0 | 2 | 816 | 24 | 846 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002314274.1 | 0 | 3 | 816 | 31 | 849 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317239.1 | 0 | 2 | 817 | 34 | 849 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521428.1 | 0 | 4 | 817 | 30 | 841 | beta-galactosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 1.96182e-44 | 10 | 312 | 14 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3d3a_A | 0.0008 | 457 | 710 | 387 | 591 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 3e-36 | 1 | 321 | 8 | 339 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 3e-36 | 1 | 321 | 8 | 339 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778160 | 711 | 3 | 706 | 0 |
HO780602 | 689 | 54 | 731 | 0 |
HO795552 | 533 | 94 | 619 | 0 |
HO795552 | 53 | 3 | 55 | 2e-32 |
HO795552 | 51 | 55 | 105 | 2e-32 |
Sequence Alignments (This image is cropped. Click for full image.) |
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