| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.011G056800.2 |
| Family | CBM57 |
| Protein Properties | Length: 593 Molecular Weight: 64430.3 Isoelectric Point: 6.8175 |
| Chromosome | Chromosome/Scaffold: 11 Start: 4977425 End: 4982278 |
| Description | receptor like protein 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM57 | 211 | 360 | 7e-26 |
| DYSGDHWGGDRFWSPIKTFGQGSDLATSTESSIKMASNAPNFYPEALYQTALVSTDTQPDLAYTMDVDPNRNYSIWLHFAEIDSSVTTAGKRVFDILING DVAFEEVDVVKMSGDRYTALVLNTTVAVNGRALTISLHPKEGSHAIINAI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 593 Download |
| MQRIPFLSRI LLFCLAFSTC LAKQPPWVMR ISCGARLNVH TAPTNTLWFK DFAYTGGIPA 60 NATLPSYISP PLKTLRYFPL SSGPNNCYNI NNVPSGHYAV RVFFGLDGHP NFDNEPLFDI 120 SVEGTQIYSL KSGWTNQDDQ VFTEALVFLN DGTASLCFHS TGHGDPAILS IEILQVDDRA 180 YYFGPAWGHG IILRTAARLS CGNGKPKFDV DYSGDHWGGD RFWSPIKTFG QGSDLATSTE 240 SSIKMASNAP NFYPEALYQT ALVSTDTQPD LAYTMDVDPN RNYSIWLHFA EIDSSVTTAG 300 KRVFDILING DVAFEEVDVV KMSGDRYTAL VLNTTVAVNG RALTISLHPK EGSHAIINAI 360 EVFEIVAAES KTLLEEVRAL QSLKSALGLP LRFGWNGDPC VPQQHPWNGA DCLYDKTSSK 420 WFIDGLGLDN QGLRGFLPND ISRLLHLQSI NLSDNSIHGA IPPSIGSIAG LVVLDLSYNL 480 FNGSIPESLG QLTSLRRLNL NGNSLSGRVP AALGGRLLHG TSFNFTDNAG LCGIPGLPTC 540 GPHLSAGAKI GVAFGASVGF LLMVICSMCW WKRRQNILRA QKIAGKGIHD KL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam11721 | Malectin | 0.002 | 28 | 171 | 164 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| PLN00113 | PLN00113 | 2.0e-8 | 375 | 514 | 186 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 4.0e-15 | 198 | 360 | 175 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| pfam12819 | Malectin_like | 1.0e-71 | 31 | 365 | 350 | + Carbohydrate-binding protein of the ER. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. | ||
| PLN03150 | PLN03150 | 0 | 9 | 587 | 581 | + hypothetical protein; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABH07898.1 | 0 | 29 | 586 | 1 | 561 | leucine-rich repeat family protein [Solanum lycopersicum] |
| EMBL | CBI30598.1 | 0 | 26 | 584 | 24 | 583 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002279791.1 | 0 | 29 | 584 | 1 | 559 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305781.1 | 0 | 29 | 587 | 1 | 559 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509445.1 | 0 | 11 | 587 | 12 | 592 | serine-threonine protein kinase, plant-type, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rj0_A | 0.000000000000003 | 398 | 547 | 608 | 752 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| PDB | 3rj0_A | 0.000000002 | 411 | 513 | 458 | 555 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| PDB | 3rj0_A | 0.0000001 | 420 | 513 | 390 | 483 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| PDB | 3rj0_A | 0.00001 | 433 | 514 | 451 | 532 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| PDB | 3rj0_A | 0.0003 | 428 | 514 | 591 | 674 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
