Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.011G078500.2 |
Family | CBM43 |
Protein Properties | Length: 238 Molecular Weight: 24315.2 Isoelectric Point: 4.9989 |
Chromosome | Chromosome/Scaffold: 11 Start: 7775155 End: 7776712 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 147 | 225 | 3.2e-31 |
WCIASTIASQTALQVAIDYACGFGGADCSAIQPGSGCYNPNTLRDHASYAFNSYYQKNPGSTSCVFGGTAQLTNTDPSK |
Full Sequence |
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Protein Sequence Length: 238 Download |
MGSGGGLQYF SIFLLYLSLY SGHPSVAGTP TLESIQKHKI VGDQENRMLI SHAVSTTQLD 60 TITGGVPVIN PTTPGTTPIV NPVDSPPAST GISPIPTTPP AGINPVDSPP APIGISPIPT 120 TPPAGIMTPV TPNPPASTNP TSSGGQWCIA STIASQTALQ VAIDYACGFG GADCSAIQPG 180 SGCYNPNTLR DHASYAFNSY YQKNPGSTSC VFGGTAQLTN TDPSKICDLD KEHHPVD* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-20 | 146 | 216 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-34 | 146 | 224 | 80 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK94231.1 | 0 | 1 | 225 | 1 | 225 | unknown [Populus trichocarpa] |
RefSeq | XP_002271903.1 | 5.00264e-43 | 12 | 225 | 11 | 208 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316740.1 | 0 | 145 | 224 | 1 | 80 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331855.1 | 4.00001e-40 | 145 | 224 | 1 | 80 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519744.1 | 0 | 26 | 225 | 18 | 193 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.00000000000003 | 142 | 224 | 8 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |