Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.011G097000.1 |
Family | GT4 |
Protein Properties | Length: 485 Molecular Weight: 54252.4 Isoelectric Point: 8.0909 |
Chromosome | Chromosome/Scaffold: 11 Start: 11817778 End: 11819232 |
Description | UDP-Glycosyltransferase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT4 | 298 | 435 | 1.7e-23 |
LVMGVAGRLVRDKGHPLLHEAFSLIIKRHPGVFLLVAGSGPWGKRYAELGPNVKILGAMDSSQLSEFYNAIDVFVNPTLRPQGLDLTLIEAMHCGKPVLT PNYPSIIGTVVVKEEFGYTFSPNVKSFVEALELTIRDG |
Full Sequence |
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Protein Sequence Length: 485 Download |
MGLKNQACKS SSSSNLFFVR YSSILTLAFL FSSCFLCISM LRYLQEPSVL AEKDSFNGDL 60 RDVKFAWNKL CFGPTFEKLK LAVFSKTWPS GAGPGGMERH ASTLYHALAA RGHEIHVFTA 120 PSDRNPHLDD IHEGNLHVYF AANDHGSVNC SLAFEIFNKI NANGEFDYVH TESVSLPHWR 180 AKLVPNVAVT WHGIWYEIMH SKLFEELFTN PDGALPGPMT ELQEAMPRLI DEIRFFSSYK 240 QHVCISHSAG EVLVRVYQLP FRNVHVILNG VDNTKFVHDP DAGARFRRKH GVPDNGSLVM 300 GVAGRLVRDK GHPLLHEAFS LIIKRHPGVF LLVAGSGPWG KRYAELGPNV KILGAMDSSQ 360 LSEFYNAIDV FVNPTLRPQG LDLTLIEAMH CGKPVLTPNY PSIIGTVVVK EEFGYTFSPN 420 VKSFVEALEL TIRDGPKVWR NKGMACKEYA LSMFTATKMA SAYERFFLCM KNSRYCQYPL 480 STDC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR00032 | argG | 5.0e-33 | 95 | 465 | 387 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
COG0438 | RfaG | 4.0e-35 | 80 | 474 | 405 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
cd03807 | GT1_WbnK_like | 6.0e-36 | 93 | 467 | 394 | + This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. | ||
cd03798 | GT1_wlbH_like | 2.0e-39 | 81 | 467 | 417 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
cd03801 | GT1_YqgM_like | 2.0e-61 | 80 | 467 | 401 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55663.1 | 0 | 24 | 474 | 27 | 476 | AC008017_36 Hypothetical protein [Arabidopsis thaliana] |
RefSeq | NP_177459.1 | 0 | 24 | 483 | 27 | 485 | glycosyl transferase family 1 protein [Arabidopsis thaliana] |
RefSeq | XP_001769489.1 | 0 | 56 | 483 | 7 | 444 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002317369.1 | 0 | 1 | 484 | 1 | 484 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524261.1 | 0 | 1 | 483 | 1 | 484 | glycosyltransferase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3okp_A | 0.0000001 | 269 | 396 | 170 | 307 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 3okc_A | 0.0000001 | 269 | 396 | 170 | 307 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' Bound To Gdp (Orthorhombic Crystal Form) |
PDB | 3oka_B | 0.0000001 | 269 | 396 | 170 | 307 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
PDB | 3oka_A | 0.0000001 | 269 | 396 | 170 | 307 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
PDB | 2gek_A | 0.00004 | 94 | 399 | 34 | 314 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |