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Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.011G159000.1 |
Family | GH28 |
Protein Properties | Length: 477 Molecular Weight: 51647.2 Isoelectric Point: 4.6406 |
Chromosome | Chromosome/Scaffold: 11 Start: 17601541 End: 17604437 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 89 | 417 | 0 |
ACAIPKSVFLVPSGRRYLVNATRFKGPCEDKLIIQIDGTIVAPDEPKNWDPDLARLWLDFSKLNGVLFQGNGVIDGSGSKWWASSCKKNKSNPCRGAPTA LTIDSSSAVKVKGLTIKNSQQMNFVISKSASVRISKVTVSSPGDSPNTDGIHITQSTNVVLQDCKIGTGDDCISIVNGSSAIKMKGIYCGPGHGVSIGSL GKDNSTGIVTKVVLDTALIRETTNGVRIKTWQGGNGYVRGVRFENVRMDNVDNPIIIDQFYCDSPKSCQNQTSAVRISEIMYRNISGTTKSAKAMKFSCS DTAPCSTIVLSNVNLEKEDGTVETYCNSA |
Full Sequence |
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Protein Sequence Length: 477 Download |
MDKLFIITLL GLLILVNGVA ENLVYNNFAM LEELESFEID DEDDVELFDI PSWTSERGGK 60 VLVNVDSFGA VGDGISDDTQ AFVKAWGTAC AIPKSVFLVP SGRRYLVNAT RFKGPCEDKL 120 IIQIDGTIVA PDEPKNWDPD LARLWLDFSK LNGVLFQGNG VIDGSGSKWW ASSCKKNKSN 180 PCRGAPTALT IDSSSAVKVK GLTIKNSQQM NFVISKSASV RISKVTVSSP GDSPNTDGIH 240 ITQSTNVVLQ DCKIGTGDDC ISIVNGSSAI KMKGIYCGPG HGVSIGSLGK DNSTGIVTKV 300 VLDTALIRET TNGVRIKTWQ GGNGYVRGVR FENVRMDNVD NPIIIDQFYC DSPKSCQNQT 360 SAVRISEIMY RNISGTTKSA KAMKFSCSDT APCSTIVLSN VNLEKEDGTV ETYCNSAEGF 420 GYGIVHPSAD CLTSHDKDYS FFEQTEVSQD YILNDVTEEK VELADSNNDR IVHTEL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-86 | 64 | 419 | 360 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-92 | 91 | 404 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 4.0e-93 | 63 | 404 | 346 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 9.0e-115 | 63 | 427 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-140 | 51 | 444 | 396 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173760.2 | 0 | 18 | 450 | 20 | 452 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 1 | 476 | 1 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 30 | 476 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 1 | 444 | 1 | 445 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 476 | 1 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-20 | 135 | 403 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-20 | 135 | 403 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-20 | 135 | 403 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-20 | 135 | 403 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-20 | 135 | 403 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |