y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.012G014500.2 |
Family | CE8 |
Protein Properties | Length: 565 Molecular Weight: 61304.3 Isoelectric Point: 7.9685 |
Chromosome | Chromosome/Scaffold: 12 Start: 1427360 End: 1431423 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 288 | 489 | 0 |
DIIVSGDGSGTFKTISEAIKKAPEHSNRRTIIYVRAGRYVEDNLKVGRKKWNLMFIGDGMGKTIITGSRSVFNHITTFHTASFAATGAGFIARDMTFENW AGPAKHQAVALRVGADHAVVYRCSIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQNCSIYARKPMASQKNTITAQNRKDPNQNTGISIHACKI LA |
Full Sequence |
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Protein Sequence Length: 565 Download |
MGYGRLGRKE SDPGEGSSNS FTINQPQHAT SQVSPTRKKK IIFLTIFSVV LIAASAASAA 60 ILLGVRDKAS GQSDPNSLTH RKPTQAISKA CSKTRFPALC VSSLLDFPGS MTASESDLVH 120 ISFNMTLLHL DKALYLSSGI SYVNMETHER SAFDDCLELL EDSIDALTRS LSTVSPSSGG 180 GGSPEDVVTW LSAALTNQDT CSEGFEGVNG TVKDQMTEKL KDLTELVSNC LAIFSATNGG 240 DFSGVPIQNK RRLMTEDGDI SEEDNFPSWL GRRERRLLGL PVSAIQADII VSGDGSGTFK 300 TISEAIKKAP EHSNRRTIIY VRAGRYVEDN LKVGRKKWNL MFIGDGMGKT IITGSRSVFN 360 HITTFHTASF AATGAGFIAR DMTFENWAGP AKHQAVALRV GADHAVVYRC SIIGYQDTLY 420 VHSNRQFYRE CDIYGTVDFI FGNAAVVLQN CSIYARKPMA SQKNTITAQN RKDPNQNTGI 480 SIHACKILAA GWLEWDASFA LDTLYYGEYM NYGPGAAVGQ RVKWPGYRVI TSTVEANKFT 540 VAQFIYGSSW LPSTGVAFLA GLSV* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 5.0e-156 | 122 | 564 | 485 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02506 | PLN02506 | 2.0e-157 | 84 | 563 | 517 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 1.0e-157 | 22 | 562 | 581 | + pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 5.0e-173 | 288 | 548 | 299 | + Pectinesterase. | ||
PLN02484 | PLN02484 | 0 | 1 | 564 | 603 | + probable pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF42038.1 | 0 | 80 | 564 | 82 | 617 | pectin methylesterase 1 [Pyrus communis] |
RefSeq | NP_190491.1 | 0 | 81 | 564 | 81 | 598 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002278061.1 | 0 | 80 | 564 | 69 | 597 | PREDICTED: similar to pectin methylesterase 1 [Vitis vinifera] |
RefSeq | XP_002317777.1 | 0 | 51 | 562 | 1 | 550 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321999.1 | 0 | 1 | 564 | 1 | 605 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 283 | 562 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 285 | 562 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.0000000000001 | 292 | 456 | 12 | 193 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.0000000000001 | 292 | 456 | 12 | 193 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.0000000000001 | 292 | 456 | 12 | 193 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
Transmembrane Domains | ||||
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Start | End | |||
41 | 63 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EC929345 | 288 | 208 | 491 | 0 |
EE256987 | 274 | 216 | 489 | 0 |
CO074124 | 287 | 190 | 472 | 0 |
DV465799 | 252 | 238 | 489 | 0 |
EG509637 | 291 | 300 | 552 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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