Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.012G091500.2 |
Family | PL1 |
Protein Properties | Length: 404 Molecular Weight: 44057.7 Isoelectric Point: 7.404 |
Chromosome | Chromosome/Scaffold: 12 Start: 11847916 End: 11849976 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 117 | 322 | 0 |
IQEEPLWIIFARDMTIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKRGGNAMVRDSPNHFGWRTVSDGDGVSIFGGAHIWVD HNSLSNCNDGLVDAIHGSSAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQ GNRFVA |
Full Sequence |
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Protein Sequence Length: 404 Download |
MANPSLCLLL LLSLLTPALV SSSPVQDPEF VVQEVHRAIN ASRRKLGYLS CGTGNPIDDC 60 WRCDPNWEKN RQRLADCAIG FGKNAIGGRN GKIYVVTESG NDDPVNPKPG TLRHAVIQEE 120 PLWIIFARDM TIQLKEELIM NSFKTIDGRG ASVHIAGGPC ITIQYVTNII IHGLNIHDCK 180 RGGNAMVRDS PNHFGWRTVS DGDGVSIFGG AHIWVDHNSL SNCNDGLVDA IHGSSAITIS 240 NNYMTHHDKV MLLGHSDSYT QDKNMQVTIA FNHFGEGLVQ RMPRCRHGYF HVVNNDYTHW 300 EMYAIGGSAS PTINSQGNRF VAPDIRFSKE VTKHEDAPES EWKNWNWRSE GDLLLNGAFF 360 VASGAGASSS YARASSLGAR PSSLVGPITM GAGALNCRKG GRC* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG3866 | PelB | 2.0e-26 | 142 | 320 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 5.0e-73 | 135 | 320 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 1.0e-78 | 129 | 324 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADB90475.1 | 0 | 26 | 403 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
GenBank | ADB90476.1 | 0 | 26 | 403 | 34 | 411 | pectate lyase [Gossypium raimondii] |
GenBank | ADB90479.1 | 0 | 26 | 403 | 34 | 411 | pectate lyase [Gossypium barbadense] |
RefSeq | XP_002318694.1 | 0 | 1 | 403 | 1 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 1 | 403 | 1 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 55 | 364 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 55 | 364 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-17 | 74 | 321 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000002 | 195 | 329 | 138 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000002 | 195 | 329 | 138 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |