| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.012G114900.1 |
| Family | CE8 |
| Protein Properties | Length: 365 Molecular Weight: 39463.3 Isoelectric Point: 5.7223 |
| Chromosome | Chromosome/Scaffold: 12 Start: 13533295 End: 13535131 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 68 | 354 | 0 |
| IKVRQDGSGEFKTLKDAINSIPTGNTERVIVDIGPGEYIEKLKIERSKPFVTFLGSPSNKPTLSFDGTAKEYGTVYSATLEAEADYFVAANIIFKNSAPR PNGELKGEQAVALRISGDKSAFYNCRLIGFQDTLCDDKGRHLFKDCYIEGTVDYIFGSGKSLYLGTELHVIGDENGNFITAHARNSEAEDTGFSFVHCKV DGTGAKGAYLGRAWQARPRVVFSYTTMSSVVNPEGWSNNFHPERDQTALFGEYKCEGEGANPAGRAKATKQLTPDQAAPFISLGFIE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 365 Download |
| MGSIAAIQCA LTAILLVSTT VSSDDKSPIP ADPSSLNTWF QDNVKPLADR KGTIDPALEA 60 AEAKPRTIKV RQDGSGEFKT LKDAINSIPT GNTERVIVDI GPGEYIEKLK IERSKPFVTF 120 LGSPSNKPTL SFDGTAKEYG TVYSATLEAE ADYFVAANII FKNSAPRPNG ELKGEQAVAL 180 RISGDKSAFY NCRLIGFQDT LCDDKGRHLF KDCYIEGTVD YIFGSGKSLY LGTELHVIGD 240 ENGNFITAHA RNSEAEDTGF SFVHCKVDGT GAKGAYLGRA WQARPRVVFS YTTMSSVVNP 300 EGWSNNFHPE RDQTALFGEY KCEGEGANPA GRAKATKQLT PDQAAPFISL GFIEGSKWLL 360 HPPN* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02304 | PLN02304 | 3.0e-90 | 67 | 359 | 302 | + probable pectinesterase |
| PLN02432 | PLN02432 | 8.0e-91 | 68 | 359 | 293 | + putative pectinesterase |
| PLN02671 | PLN02671 | 2.0e-92 | 66 | 359 | 304 | + pectinesterase |
| PLN02682 | PLN02682 | 5.0e-116 | 10 | 361 | 364 | + pectinesterase family protein |
| PLN02665 | PLN02665 | 0 | 1 | 364 | 365 | + pectinesterase family protein |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002309337.1 | 0 | 7 | 364 | 11 | 368 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002318197.1 | 0 | 1 | 364 | 1 | 364 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002321778.1 | 0 | 2 | 364 | 4 | 362 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333446.1 | 0 | 1 | 364 | 1 | 365 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511043.1 | 0 | 4 | 363 | 8 | 364 | Pectinesterase-1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 6.99949e-42 | 59 | 359 | 1 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 4e-35 | 70 | 359 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 1e-23 | 78 | 347 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 1e-23 | 78 | 347 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 1e-23 | 78 | 347 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
