Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.012G115200.1 |
Family | CE8 |
Protein Properties | Length: 255 Molecular Weight: 27676.6 Isoelectric Point: 7.091 |
Chromosome | Chromosome/Scaffold: 12 Start: 13569228 End: 13570230 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 68 | 230 | 0 |
IKVRQDGSGEFKTLKDAINSIPTGNTERVIVDIGPGEYIEKLKIERSKPFVTFLGSPSNKPTLSFDGTAKEYGTVYSATLEAEADYFVAANIIFKNSAPR PNGELKGEQAVALRISGDKSAFYNCRLIGFQDTLCDDKGRHLFKDCYIEGTVDYIFGSGKSLY |
Full Sequence |
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Protein Sequence Length: 255 Download |
MGSIAAIQCA LTAILLVSTT VSSDDKSPIP ADPSSLNTWF QDNVKPLADR KGTIDPALEA 60 AEAKPRTIKV RQDGSGEFKT LKDAINSIPT GNTERVIVDI GPGEYIEKLK IERSKPFVTF 120 LGSPSNKPTL SFDGTAKEYG TVYSATLEAE ADYFVAANII FKNSAPRPNG ELKGEQAVAL 180 RISGDKSAFY NCRLIGFQDT LCDDKGRHLF KDCYIEGTVD YIFGSGKSLY LVTLKKLTLR 240 IKFFLKLDCV TVDG* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02671 | PLN02671 | 2.0e-45 | 66 | 230 | 175 | + pectinesterase |
PLN02773 | PLN02773 | 3.0e-47 | 66 | 229 | 175 | + pectinesterase |
PLN02634 | PLN02634 | 2.0e-53 | 66 | 230 | 172 | + probable pectinesterase |
PLN02682 | PLN02682 | 2.0e-60 | 10 | 230 | 233 | + pectinesterase family protein |
PLN02665 | PLN02665 | 6.0e-164 | 1 | 233 | 234 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309337.1 | 0 | 7 | 233 | 11 | 237 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 1 | 233 | 1 | 233 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321778.1 | 0 | 2 | 233 | 4 | 233 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 1 | 233 | 1 | 234 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336983.1 | 0 | 1 | 233 | 1 | 233 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 6e-25 | 59 | 225 | 1 | 162 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-20 | 70 | 230 | 7 | 163 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-19 | 78 | 230 | 18 | 185 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-19 | 78 | 230 | 18 | 185 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-19 | 78 | 230 | 18 | 185 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |