Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.013G005000.1 |
Family | GH28 |
Protein Properties | Length: 479 Molecular Weight: 52111.3 Isoelectric Point: 6.4308 |
Chromosome | Chromosome/Scaffold: 13 Start: 330024 End: 332158 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 101 | 429 | 0 |
DTACFQNEPAILLAPDDYSFMIQPTVFTGPCKTSLVFQIDGTIMPPDGPESWPSKTNKRQWLVFYKIDGMSMQGGGVIDGRGEKWWNLPCKPHKGPNGAT LPGPCDSPVAMRFFMSSNLIVQGLEVKNSPQFHFRFDNCQDVTVQMLSIKSPPLSPNTDGIHIENTNNVQIYNSVISNGDDCVSIGAGCHNVDIKNITCG PSHGISIGSLGIGNSRACVSNITVRDSVIKHSDNGVRIKTWQGGYGSVSKISFHNINMETVRNPIIIDQYYCQTKNCTNQTSAVHISDILYTSIKGTYDV RSPPLHLACSDSVPCTNLELAEIELLPAH |
Full Sequence |
---|
Protein Sequence Length: 479 Download |
MTLSKILLLA FAFFFTYIEG RVHGKTKPKH LHIVSLISLP PAPAPAPAPQ AASPSYYTDS 60 PSPGPSPNLV RSLANVYNVL SFGAVGDGDT DDTQAFKMAW DTACFQNEPA ILLAPDDYSF 120 MIQPTVFTGP CKTSLVFQID GTIMPPDGPE SWPSKTNKRQ WLVFYKIDGM SMQGGGVIDG 180 RGEKWWNLPC KPHKGPNGAT LPGPCDSPVA MRFFMSSNLI VQGLEVKNSP QFHFRFDNCQ 240 DVTVQMLSIK SPPLSPNTDG IHIENTNNVQ IYNSVISNGD DCVSIGAGCH NVDIKNITCG 300 PSHGISIGSL GIGNSRACVS NITVRDSVIK HSDNGVRIKT WQGGYGSVSK ISFHNINMET 360 VRNPIIIDQY YCQTKNCTNQ TSAVHISDIL YTSIKGTYDV RSPPLHLACS DSVPCTNLEL 420 AEIELLPAHG QFVADPFCWN AYGAMQNLTI PPISCLLDGI PQYIGQNTID QYCQNNLY* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-70 | 77 | 452 | 383 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 1.0e-73 | 72 | 473 | 409 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-79 | 120 | 425 | 307 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-90 | 78 | 425 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-113 | 66 | 452 | 389 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002276945.1 | 0 | 35 | 471 | 42 | 463 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 1 | 478 | 1 | 478 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 76 | 473 | 42 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 56 | 463 | 1 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 1 | 471 | 1 | 469 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-26 | 140 | 425 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-26 | 140 | 425 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-26 | 140 | 425 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-26 | 140 | 425 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-26 | 140 | 425 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |