Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.013G008100.1 |
Family | CE8 |
Protein Properties | Length: 340 Molecular Weight: 37629.7 Isoelectric Point: 8.4494 |
Chromosome | Chromosome/Scaffold: 13 Start: 507302 End: 509930 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 39 | 329 | 0 |
IVVDHSGKGHFIKIQDAIDSIPINNDQWIKVRINPGTYIEQVTIPEDKPCIFLEGRDRTLTTITYNAHESTDTSATFTSSPSNIVAKGITFKNSYNLPFK QNINYGIKIPGVGVAPALSARIYGDKSAFYDCAFLGVQDTLWDVEGRHHFFNCYIEGAVDFIFGAGQSFYEGCSINVTSKGVITAQGREFPNDPSGFIFS GCTISGIEGVRAFLGRAYRPFSRVIFQDSYFSKVVDPLGWNAWGYAGQEENFTYVEVDCKGPGSNKSKRVPWVRKPSTGQHELFSKPSFID |
Full Sequence |
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Protein Sequence Length: 340 Download |
MQKPLFNAIV IILFITISSS NSQAIDCKPG RGKRVRKTIV VDHSGKGHFI KIQDAIDSIP 60 INNDQWIKVR INPGTYIEQV TIPEDKPCIF LEGRDRTLTT ITYNAHESTD TSATFTSSPS 120 NIVAKGITFK NSYNLPFKQN INYGIKIPGV GVAPALSARI YGDKSAFYDC AFLGVQDTLW 180 DVEGRHHFFN CYIEGAVDFI FGAGQSFYEG CSINVTSKGV ITAQGREFPN DPSGFIFSGC 240 TISGIEGVRA FLGRAYRPFS RVIFQDSYFS KVVDPLGWNA WGYAGQEENF TYVEVDCKGP 300 GSNKSKRVPW VRKPSTGQHE LFSKPSFIDQ DGWLAKLPL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 1.0e-79 | 38 | 334 | 312 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 1.0e-80 | 36 | 334 | 308 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-84 | 39 | 334 | 298 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 3.0e-103 | 30 | 339 | 318 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 1.0e-115 | 37 | 339 | 310 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002318946.1 | 0 | 1 | 339 | 1 | 339 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 1 | 339 | 1 | 324 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515259.1 | 0 | 23 | 338 | 348 | 660 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002515259.1 | 0 | 24 | 338 | 24 | 339 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002529267.1 | 0 | 33 | 338 | 34 | 337 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 8e-37 | 39 | 334 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-27 | 40 | 310 | 6 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.0000000000007 | 39 | 213 | 7 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.0000000000007 | 39 | 213 | 7 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.0000000000007 | 39 | 213 | 7 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |