| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.013G021200.2 |
| Family | GH2 |
| Protein Properties | Length: 848 Molecular Weight: 96498.5 Isoelectric Point: 6.5385 |
| Chromosome | Chromosome/Scaffold: 13 Start: 1400890 End: 1407668 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH2 | 1 | 610 | 0 |
| MFRRHSLDVTDILHPDGQNLLAVLVHPPDHPGTIPPEGGQGGDHEIGKDVATQYVEGWDWMAPIRDRNTGIWDEVSISITGPVKIIDPHLVSTFFDGYKR VYLHTTTELENKSSSVVECDLNIQVTSELEGGVCIVEHLQTQQLSIPSGKRVQHTFPQLFFYKPNLWWPNGMGKQALYNVTITVDVKGHGESDSWSHMYG FRKIESYIDSATGGRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNFNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRGVP VSNPNGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPPPDINNALKDELKLHPYFESLHNTGKSVQELSASVKDPSNYLDGTRIYIQGSMWDGFAN GKGDFTDGPYEIQYPESFFKDDFYNYGFNPEVGSVGVPVAATIKATMPPEGWKIPLFKKLPDGYVEEVPNPIWEYHKYIPYSKPGKVHNQILLYGTPTDL NDFCLKAQLVNYIQYRALLEGWTSRMWSKYTGVLIWKTQNPWTGLRGQFYDHLHDQTAGFYGCRSAAEPVHVQLNLATYFIEVVNTLSEQLSDVAIEASV WDLEGTCPYY | |||
| Full Sequence |
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| Protein Sequence Length: 848 Download |
| MFRRHSLDVT DILHPDGQNL LAVLVHPPDH PGTIPPEGGQ GGDHEIGKDV ATQYVEGWDW 60 MAPIRDRNTG IWDEVSISIT GPVKIIDPHL VSTFFDGYKR VYLHTTTELE NKSSSVVECD 120 LNIQVTSELE GGVCIVEHLQ TQQLSIPSGK RVQHTFPQLF FYKPNLWWPN GMGKQALYNV 180 TITVDVKGHG ESDSWSHMYG FRKIESYIDS ATGGRLFKVN GQPIFIRGGN WILSDGLLRL 240 SKKRYKTDIK FHADMNFNMI RCWGGGLAER PEFYHYCDIY GLLVWQEFWI TGDVDGRGVP 300 VSNPNGPLDH DLFMLCARDT VKLLRNHPSL ALWVGGNEQV PPPDINNALK DELKLHPYFE 360 SLHNTGKSVQ ELSASVKDPS NYLDGTRIYI QGSMWDGFAN GKGDFTDGPY EIQYPESFFK 420 DDFYNYGFNP EVGSVGVPVA ATIKATMPPE GWKIPLFKKL PDGYVEEVPN PIWEYHKYIP 480 YSKPGKVHNQ ILLYGTPTDL NDFCLKAQLV NYIQYRALLE GWTSRMWSKY TGVLIWKTQN 540 PWTGLRGQFY DHLHDQTAGF YGCRSAAEPV HVQLNLATYF IEVVNTLSEQ LSDVAIEASV 600 WDLEGTCPYY VVHEKLSVPS KKTVPILEMK YPKSKNPKPV YFLLLKLYKM SDYGVISRNF 660 YWLHLPGGDY KLLEPYRKKR VPLKIRSTTF IKGSTYEMEM HVENKSKKPD SKSLTYKNNF 720 VTRIGDGDFD MASVEPVNSA AEEKQEASLF QRIYRRFSGE TDDLQVSEIN GSDEGVAFFL 780 YFSVHASEPG HKEGEDTRIL PVHYSDNYFS LVPGEVMPIK ISFEVPPGVT PRIRLHGWNY 840 HSGHKVY* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02836 | Glyco_hydro_2_C | 0.0002 | 216 | 338 | 131 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK09525 | lacZ | 5.0e-6 | 8 | 338 | 361 | + beta-D-galactosidase; Reviewed | ||
| pfam00703 | Glyco_hydro_2 | 2.0e-9 | 83 | 202 | 120 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK10340 | ebgA | 1.0e-10 | 8 | 338 | 346 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| COG3250 | LacZ | 1.0e-27 | 1 | 338 | 347 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO27794.1 | 0 | 1 | 843 | 128 | 971 | glycosyl hydrolase [Gossypium hirsutum] |
| EMBL | CAN82620.1 | 0 | 1 | 847 | 127 | 973 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002284576.1 | 0 | 1 | 847 | 127 | 973 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319539.1 | 0 | 1 | 847 | 127 | 973 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512381.1 | 0 | 1 | 846 | 127 | 972 | beta-mannosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 1.4013e-45 | 2 | 663 | 166 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 1.4013e-45 | 2 | 663 | 166 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 4.2039e-45 | 2 | 663 | 166 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| ES793920 | 386 | 246 | 626 | 0 |
| GO871600 | 333 | 174 | 506 | 0 |
| ES832790 | 358 | 372 | 729 | 0 |
| ES818807 | 293 | 33 | 325 | 0 |
| ES818807 | 134 | 313 | 433 | 0.000004 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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