| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.013G021200.3 |
| Family | GH2 |
| Protein Properties | Length: 974 Molecular Weight: 110348 Isoelectric Point: 6.5607 |
| Chromosome | Chromosome/Scaffold: 13 Start: 1400873 End: 1407643 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH2 | 37 | 736 | 0 |
| LDKPWMEAAVPGTVLGTLVKNKAVPDPFYGLGNEVIIDIADSGREYYTFWFFTTFQCKLSANQHLDLNFRGINYSAELYLNGNKKILPKGMFRRHSLDVT DILHPDGQNLLAVLVHPPDHPGTIPPEGGQGGDHEIGKDVATQYVEGWDWMAPIRDRNTGIWDEVSISITGPVKIIDPHLVSTFFDGYKRVYLHTTTELE NKSSSVVECDLNIQVTSELEGGVCIVEHLQTQQLSIPSGKRVQHTFPQLFFYKPNLWWPNGMGKQALYNVTITVDVKGHGESDSWSHMYGFRKIESYIDS ATGGRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNFNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPNGPLDH DLFMLCARDTVKLLRNHPSLALWVGGNEQVPPPDINNALKDELKLHPYFESLHNTGKSVQELSASVKDPSNYLDGTRIYIQGSMWDGFANGKGDFTDGPY EIQYPESFFKDDFYNYGFNPEVGSVGVPVAATIKATMPPEGWKIPLFKKLPDGYVEEVPNPIWEYHKYIPYSKPGKVHNQILLYGTPTDLNDFCLKAQLV NYIQYRALLEGWTSRMWSKYTGVLIWKTQNPWTGLRGQFYDHLHDQTAGFYGCRSAAEPVHVQLNLATYFIEVVNTLSEQLSDVAIEASVWDLEGTCPYY | |||
| Full Sequence |
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| Protein Sequence Length: 974 Download |
| MAEIGKTVLD SGWLAARSTE VHLSGTQLTT THSPSGLDKP WMEAAVPGTV LGTLVKNKAV 60 PDPFYGLGNE VIIDIADSGR EYYTFWFFTT FQCKLSANQH LDLNFRGINY SAELYLNGNK 120 KILPKGMFRR HSLDVTDILH PDGQNLLAVL VHPPDHPGTI PPEGGQGGDH EIGKDVATQY 180 VEGWDWMAPI RDRNTGIWDE VSISITGPVK IIDPHLVSTF FDGYKRVYLH TTTELENKSS 240 SVVECDLNIQ VTSELEGGVC IVEHLQTQQL SIPSGKRVQH TFPQLFFYKP NLWWPNGMGK 300 QALYNVTITV DVKGHGESDS WSHMYGFRKI ESYIDSATGG RLFKVNGQPI FIRGGNWILS 360 DGLLRLSKKR YKTDIKFHAD MNFNMIRCWG GGLAERPEFY HYCDIYGLLV WQEFWITGDV 420 DGRGVPVSNP NGPLDHDLFM LCARDTVKLL RNHPSLALWV GGNEQVPPPD INNALKDELK 480 LHPYFESLHN TGKSVQELSA SVKDPSNYLD GTRIYIQGSM WDGFANGKGD FTDGPYEIQY 540 PESFFKDDFY NYGFNPEVGS VGVPVAATIK ATMPPEGWKI PLFKKLPDGY VEEVPNPIWE 600 YHKYIPYSKP GKVHNQILLY GTPTDLNDFC LKAQLVNYIQ YRALLEGWTS RMWSKYTGVL 660 IWKTQNPWTG LRGQFYDHLH DQTAGFYGCR SAAEPVHVQL NLATYFIEVV NTLSEQLSDV 720 AIEASVWDLE GTCPYYVVHE KLSVPSKKTV PILEMKYPKS KNPKPVYFLL LKLYKMSDYG 780 VISRNFYWLH LPGGDYKLLE PYRKKRVPLK IRSTTFIKGS TYEMEMHVEN KSKKPDSKSL 840 TYKNNFVTRI GDGDFDMASV EPVNSAAEEK QEASLFQRIY RRFSGETDDL QVSEINGSDE 900 GVAFFLYFSV HASEPGHKEG EDTRILPVHY SDNYFSLVPG EVMPIKISFE VPPGVTPRIR 960 LHGWNYHSGH KVY* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK09525 | lacZ | 5.0e-6 | 134 | 464 | 361 | + beta-D-galactosidase; Reviewed | ||
| PRK10150 | PRK10150 | 5.0e-7 | 36 | 488 | 486 | + beta-D-glucuronidase; Provisional | ||
| pfam00703 | Glyco_hydro_2 | 3.0e-9 | 209 | 328 | 120 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK10340 | ebgA | 9.0e-14 | 98 | 464 | 382 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| COG3250 | LacZ | 9.0e-37 | 43 | 464 | 432 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO27794.1 | 0 | 1 | 969 | 1 | 971 | glycosyl hydrolase [Gossypium hirsutum] |
| EMBL | CAN82620.1 | 0 | 1 | 973 | 1 | 973 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002284576.1 | 0 | 1 | 973 | 1 | 973 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319539.1 | 0 | 1 | 973 | 1 | 973 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512381.1 | 0 | 1 | 972 | 1 | 972 | beta-mannosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 0 | 41 | 789 | 81 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 0 | 41 | 789 | 81 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 0 | 41 | 789 | 81 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| ES793920 | 386 | 372 | 752 | 0 |
| GO871600 | 333 | 300 | 632 | 0 |
| ES832790 | 358 | 498 | 855 | 0 |
| ES818807 | 293 | 159 | 451 | 0 |
| ES818807 | 134 | 439 | 559 | 0.000005 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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