Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.013G067400.1 |
Family | GT47 |
Protein Properties | Length: 510 Molecular Weight: 57928.1 Isoelectric Point: 9.1514 |
Chromosome | Chromosome/Scaffold: 13 Start: 5391476 End: 5394803 |
Description | exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 118 | 433 | 0 |
VLKVFMYDLPSEFHFGLLDWKPQGGSVWPDLRAKVPAYPGGLNLQHSIEYWLTMDLLASEIPGIPRAGSAVRVQNSSEADVIFVPFFSSISYNRYSKVNP HQKKSKNKSLEEKLVKFVTSQKEWKRSGGRDHIILAHHPNSMLYARMKLWTAMFILADFGRYSPNIANVGKDVIAPYKHVIKSYANDSSNFDSRPTLLYF QGAIYRKDGGFARQELFYALKDEKDVHFQFGSVQKDGVSKASQGMHSSKFCLNIAGDTPSSNRLFDAIASHCVPVIISDDIELPYEDVLDYSQFCIFVRT SDAVREKFLINLVRSI |
Full Sequence |
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Protein Sequence Length: 510 Download |
MAEKHSSSSL GVVSRKSMFC LFSFVSALFI LSWFFMLRST VSAGFIDLSL LPHPKLNSVI 60 DNGNSASWNR NDVEPSIGNR ARAIPVDIEG DGGEEKPQEK DDLGDVKCNS FDNNCNQVLK 120 VFMYDLPSEF HFGLLDWKPQ GGSVWPDLRA KVPAYPGGLN LQHSIEYWLT MDLLASEIPG 180 IPRAGSAVRV QNSSEADVIF VPFFSSISYN RYSKVNPHQK KSKNKSLEEK LVKFVTSQKE 240 WKRSGGRDHI ILAHHPNSML YARMKLWTAM FILADFGRYS PNIANVGKDV IAPYKHVIKS 300 YANDSSNFDS RPTLLYFQGA IYRKDGGFAR QELFYALKDE KDVHFQFGSV QKDGVSKASQ 360 GMHSSKFCLN IAGDTPSSNR LFDAIASHCV PVIISDDIEL PYEDVLDYSQ FCIFVRTSDA 420 VREKFLINLV RSIKKDEWTR MWQRLKEVEN FFEFQYPSKE GDAVQMIWQA VARKVPAIRL 480 KVNKFRRFSR FGTHEDGVLR KIPSPSNFW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-52 | 119 | 433 | 325 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33321.1 | 0 | 1 | 509 | 1 | 509 | secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] |
RefSeq | XP_002268382.1 | 0 | 1 | 509 | 1 | 488 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319201.1 | 0 | 1 | 489 | 3 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002325457.1 | 0 | 1 | 509 | 1 | 463 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530948.1 | 0 | 1 | 505 | 1 | 496 | catalytic, putative [Ricinus communis] |