| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.013G105100.1 |
| Family | GH35 |
| Protein Properties | Length: 789 Molecular Weight: 86443.7 Isoelectric Point: 7.5189 |
| Chromosome | Chromosome/Scaffold: 13 Start: 11880266 End: 11887422 |
| Description | beta-galactosidase 16 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH35 | 33 | 327 | 0 |
| LIIDGQRKIVFSGSIHYPRSTPEMWPSLIAKAKEGGLDAIETYVFWNVHEPQPGHYDFSGGHDIVRFIKEVQAQGLYACLRIGPFIQSEWSYGGLPFWLH DIPGIVFRSDNEPFKVYMQNFTAKVVSMMQSENLYASQGGPIILSQIENEYGTVQKAYGQEGLAYVQWAAQMAEGLQTGVPWVMCKQNNAPGHVINSCNG MKCGQTFVGPNSPNKPSIWTENWTTQSAEDIAFHVTLFIAAKKGSFVNYYMYHGGTNFGRTASAFVTTSYYDQAPLDEYGLTTQPKWGHLKELHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 789 Download |
| MRRVLFLVAA VLAVIGSGSA VRGGDVTYDG RSLIIDGQRK IVFSGSIHYP RSTPEMWPSL 60 IAKAKEGGLD AIETYVFWNV HEPQPGHYDF SGGHDIVRFI KEVQAQGLYA CLRIGPFIQS 120 EWSYGGLPFW LHDIPGIVFR SDNEPFKVYM QNFTAKVVSM MQSENLYASQ GGPIILSQIE 180 NEYGTVQKAY GQEGLAYVQW AAQMAEGLQT GVPWVMCKQN NAPGHVINSC NGMKCGQTFV 240 GPNSPNKPSI WTENWTTQSA EDIAFHVTLF IAAKKGSFVN YYMYHGGTNF GRTASAFVTT 300 SYYDQAPLDE YGLTTQPKWG HLKELHAAIK LCSTPLLSGV QVNLYLGPQQ QAYIFNAVSG 360 ECAAFLINND SSNAASVPFR NASYDLPPMS ISILPDCKNV STQYTTRTMG RGEVLDAADV 420 WQEFTEAIPN FDSTSTRSET LLEQMNTTKD SSDYLWYTFR FQHESSDTQA ILDVSSLGHA 480 LHAFVNGQSV GSVQGSRKNP RFKFETSVSL SKGINNVSLL SVMVGMPDSG AFLENRAAGL 540 RTVMIRDKQD NNDFTNYSWG YQIGLQGETL QIYTEQGSSQ VQWKKFSNAG NPLTWYKTQV 600 DAPPGDVPVA LNLASMGKGE AWVNGQSIGR YWPSYHVPRS FLKPAGNLLV LQEEEGGNPL 660 QVSLDTVTIS QVCGHVTASH LAPVSSWIEH NQRDKSPAKV SGRRPKVLLA CPSKSKISRI 720 SFASYGTPLG NCRNSMAVGT CHSQNSKAVV EEACLGKMKC SIPVSVRQFG GDPCPAKAKS 780 LMVVAECR* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13364 | BetaGal_dom4_5 | 9.0e-5 | 429 | 526 | 100 | + Beta-galactosidase jelly roll domain. This domain is found in beta galactosidase enzymes. It has a jelly roll fold. | ||
| pfam02140 | Gal_Lectin | 7.0e-19 | 709 | 787 | 81 | + Galactose binding lectin domain. | ||
| COG1874 | LacA | 7.0e-22 | 26 | 184 | 170 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam01301 | Glyco_hydro_35 | 7.0e-149 | 32 | 329 | 323 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 26 | 787 | 823 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI18990.1 | 0 | 12 | 787 | 13 | 816 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002284529.1 | 0 | 27 | 788 | 25 | 813 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002302225.1 | 0 | 23 | 787 | 5 | 797 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002327281.1 | 0 | 1 | 788 | 1 | 788 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002521778.1 | 0 | 22 | 788 | 20 | 828 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 2e-35 | 32 | 325 | 14 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.005 | 582 | 656 | 497 | 575 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 5e-33 | 22 | 316 | 7 | 322 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 5e-33 | 22 | 316 | 7 | 322 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
