Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.013G130400.1 |
Family | GH5 |
Protein Properties | Length: 436 Molecular Weight: 50225 Isoelectric Point: 7.1415 |
Chromosome | Chromosome/Scaffold: 13 Start: 14201383 End: 14206601 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 56 | 381 | 3.1e-34 |
GRAFYINGWNSYWLMDHSVDEDRKPRVGAMLEAGAKMGLTVCRTWAFNDGGYNALQVSPGRFDERVLRALDYVIAEARQHGVRLLLSLVNNLKAYGGKTQ YVNWAWEEGIGLSSSNDSFFFDPSIKRYFKHYVKTLLTRKNTITGIEYRNDPTIFAWELMNEPRCMSDPSGDTLQDWIEEMSAFVKTIDTNHLLTVGLEG FYGPKNPKRLTVNPESWASSLGSDFVRNSKAPAIDFASVHIYPDHWFPHQEFEDKLKYVSKWMLSHIEDGHYELNKPVFFTEFGLSNLNKDFQPSQRDRF YKTIFDIIYKSSKRKRAGAGALIWQL |
Full Sequence |
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Protein Sequence Length: 436 Download |
MQKMVAGNGL LYPILGFASC VAFIYMSFGG FILTNHQEHR ELSFVERNGT QFMVDGRAFY 60 INGWNSYWLM DHSVDEDRKP RVGAMLEAGA KMGLTVCRTW AFNDGGYNAL QVSPGRFDER 120 VLRALDYVIA EARQHGVRLL LSLVNNLKAY GGKTQYVNWA WEEGIGLSSS NDSFFFDPSI 180 KRYFKHYVKT LLTRKNTITG IEYRNDPTIF AWELMNEPRC MSDPSGDTLQ DWIEEMSAFV 240 KTIDTNHLLT VGLEGFYGPK NPKRLTVNPE SWASSLGSDF VRNSKAPAID FASVHIYPDH 300 WFPHQEFEDK LKYVSKWMLS HIEDGHYELN KPVFFTEFGL SNLNKDFQPS QRDRFYKTIF 360 DIIYKSSKRK RAGAGALIWQ LFVEGMDDFN DDFGIVPWER ESTNRILTDQ SCRLARIHGI 420 SPQNKYLKEL CLQRQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12876 | Cellulase-like | 0.004 | 202 | 297 | 105 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
pfam00150 | Cellulase | 2.0e-9 | 205 | 351 | 148 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 2.0e-25 | 84 | 396 | 322 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95966.1 | 0 | 1 | 435 | 1 | 435 | unknown [Populus trichocarpa] |
GenBank | ACN78665.1 | 0 | 4 | 435 | 13 | 443 | endo-beta-mannanase [Malus x domestica] |
RefSeq | NP_179660.2 | 0 | 6 | 434 | 5 | 432 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330687.1 | 0 | 1 | 435 | 1 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517909.1 | 0 | 4 | 435 | 1 | 431 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 43 | 417 | 5 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 53 | 411 | 21 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 53 | 411 | 21 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 53 | 411 | 21 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 53 | 411 | 21 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |