y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.013G152700.2 |
Family | AA1 |
Protein Properties | Length: 448 Molecular Weight: 50016.1 Isoelectric Point: 9.4572 |
Chromosome | Chromosome/Scaffold: 13 Start: 15615904 End: 15618424 |
Description | laccase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 32 | 445 | 0 |
AETHYREFVIQAKPVKRLCRTHNTITVNGLFPGPTLEVRDGDTLVIKAVNNARYNVTLHWHGIRQLRNPWADGPDRVTQCPIRPGRSYTYRFTIENQEGT LWWHAHSRWLRATVYGALIIHPKLGSPYPFPMPRTEIPILLGEWWDRNPMDVLRIADFTGAAPNISDAYTINGQPGDLYRCSKQETVRFPVGSGETILLR VINSALNQELFFGVANHILTVVAVDAAYTKPFTTSVIMIAPGQTTDVLLTADQTPGHYYMAARAYNSANAPFDNTTTTAILEYKTAPRNAKKGKQSTPIF PRLPGFNDTNSAIAFTSRLRSPSKVKVPLQIDENLFFTVGLGLINCTNPNSPRCQGPNGTRFAASINNMSFVLPKRNSLMQAYYQGQPGIFTTDFPPVPP VKFDYTGNESGSCT |
Full Sequence |
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Protein Sequence Length: 448 Download |
METRNLTVKQ VSYCLFLSIF VIFSFQAHFS EAETHYREFV IQAKPVKRLC RTHNTITVNG 60 LFPGPTLEVR DGDTLVIKAV NNARYNVTLH WHGIRQLRNP WADGPDRVTQ CPIRPGRSYT 120 YRFTIENQEG TLWWHAHSRW LRATVYGALI IHPKLGSPYP FPMPRTEIPI LLGEWWDRNP 180 MDVLRIADFT GAAPNISDAY TINGQPGDLY RCSKQETVRF PVGSGETILL RVINSALNQE 240 LFFGVANHIL TVVAVDAAYT KPFTTSVIMI APGQTTDVLL TADQTPGHYY MAARAYNSAN 300 APFDNTTTTA ILEYKTAPRN AKKGKQSTPI FPRLPGFNDT NSAIAFTSRL RSPSKVKVPL 360 QIDENLFFTV GLGLINCTNP NSPRCQGPNG TRFAASINNM SFVLPKRNSL MQAYYQGQPG 420 IFTTDFPPVP PVKFDYTGNE SGSCTVI* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02604 | PLN02604 | 4.0e-38 | 7 | 428 | 454 | + oxidoreductase | ||
pfam00394 | Cu-oxidase | 2.0e-42 | 167 | 317 | 155 | + Multicopper oxidase. Many of the proteins in this family contain multiple similar copies of this plastocyanin-like domain. | ||
TIGR03388 | ascorbase | 1.0e-49 | 50 | 428 | 412 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
pfam07732 | Cu-oxidase_3 | 9.0e-53 | 40 | 154 | 117 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
TIGR03389 | laccase | 0 | 32 | 439 | 412 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_180580.1 | 0 | 16 | 441 | 9 | 435 | LAC3 (laccase 3); laccase [Arabidopsis thaliana] |
RefSeq | NP_196330.3 | 0 | 13 | 441 | 7 | 434 | LAC13 (laccase 13); laccase [Arabidopsis thaliana] |
RefSeq | XP_002319955.1 | 0 | 1 | 441 | 1 | 441 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326089.1 | 0 | 1 | 441 | 1 | 441 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516345.1 | 0 | 1 | 439 | 1 | 440 | laccase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 2e-37 | 50 | 426 | 19 | 401 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose |
PDB | 1asq_A | 2e-37 | 50 | 426 | 19 | 401 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose |
PDB | 1asp_B | 2e-37 | 50 | 426 | 19 | 401 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose |
PDB | 1asp_A | 2e-37 | 50 | 426 | 19 | 401 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose |
PDB | 1aso_B | 2e-37 | 50 | 426 | 19 | 401 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose |