y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.014G004500.2 |
Family | PL4 |
Protein Properties | Length: 509 Molecular Weight: 58176.6 Isoelectric Point: 5.4425 |
Chromosome | Chromosome/Scaffold: 14 Start: 516087 End: 520759 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 2 | 499 | 0 |
VMDNGLVQVTLSSPGGDITGIQYNGIHNVLETRNREGNRGYWDVVWNLPGNHIAYDRLKGTDFNVIMEDEDQVELSFKKSWNFTHGGSSAPLNVDKRYIM RRGSSGVYLYAILERLEGWPDMDMDQIRIVFKLQNDKFHFMAISDDRQRIMPMPRDRISGEPLAYPEAVLLTNPTNPQLGGEVDDKYHYSCENKDNRVHG WISENPTVGFWMITASDEFRAGGPLKQDLTSHVGPTVLSMFTSTHYSGKDLNTKYRNGKPWKKVLGPVFVYLNSISSLEDPTTLWEDAKDQMSIEVNSWP YNFPQSEDFPSSDRRGTVSGQLLVGDKYISDKPMWASYAYVGLAAPGGVGSWERDAMGYQFWVQANEEGHFLIENIRAGHYNLYAWVPGIVGDCRYDVII HIQPGCDVKLGVLVYEPPRNGPTLWEIGIPDRTAAEFFVPDTYPTLMNKLFINQSTHKFRQYGLWERYSDLYPKHDLIYTTGISNYHQDWFFAQVPRY |
Full Sequence |
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Protein Sequence Length: 509 Download |
MVMDNGLVQV TLSSPGGDIT GIQYNGIHNV LETRNREGNR GYWDVVWNLP GNHIAYDRLK 60 GTDFNVIMED EDQVELSFKK SWNFTHGGSS APLNVDKRYI MRRGSSGVYL YAILERLEGW 120 PDMDMDQIRI VFKLQNDKFH FMAISDDRQR IMPMPRDRIS GEPLAYPEAV LLTNPTNPQL 180 GGEVDDKYHY SCENKDNRVH GWISENPTVG FWMITASDEF RAGGPLKQDL TSHVGPTVLS 240 MFTSTHYSGK DLNTKYRNGK PWKKVLGPVF VYLNSISSLE DPTTLWEDAK DQMSIEVNSW 300 PYNFPQSEDF PSSDRRGTVS GQLLVGDKYI SDKPMWASYA YVGLAAPGGV GSWERDAMGY 360 QFWVQANEEG HFLIENIRAG HYNLYAWVPG IVGDCRYDVI IHIQPGCDVK LGVLVYEPPR 420 NGPTLWEIGI PDRTAAEFFV PDTYPTLMNK LFINQSTHKF RQYGLWERYS DLYPKHDLIY 480 TTGISNYHQD WFFAQVPRYP SLIPLCFF* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10317 | RGL4_C | 1.0e-11 | 426 | 496 | 71 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10316 | RGL4_M | 4.0e-28 | 315 | 414 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-75 | 1 | 275 | 281 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-87 | 2 | 184 | 185 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285626.1 | 0 | 3 | 498 | 1 | 497 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002308510.1 | 0 | 1 | 498 | 57 | 553 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 1 | 498 | 1 | 498 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 1 | 498 | 54 | 550 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 1 | 498 | 2 | 500 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GW864372 | 311 | 130 | 438 | 0 |
DY969340 | 287 | 212 | 498 | 0 |
JG640880 | 273 | 138 | 408 | 0 |
DT729214 | 262 | 55 | 314 | 0 |
DT729214 | 32 | 316 | 347 | 7.8 |
Sequence Alignments (This image is cropped. Click for full image.) |
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