Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.014G117100.1 |
Family | CE8 |
Protein Properties | Length: 382 Molecular Weight: 42677.2 Isoelectric Point: 9.3834 |
Chromosome | Chromosome/Scaffold: 14 Start: 9103057 End: 9105611 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 84 | 372 | 0 |
VTVSQDGNGEFKTIKEAINSIPPYNTRRVIIAIKPGVYREKIFIPRTFPFVTFLGDSSEPPTITGNDTASVSGKDGKPLRTYQSATVAVDANYFVAISMK FENTAPHVIGTKQEQAVALRISGTKAAFYNCSFFGDQDTLYDHKGLHYFNNCFIQGSVDFIFGSGRSFYENCHLNSVAKKVASLTAQKRSNSSLASGFSF KDSTITGSGLIYLGRAWGDYSRVIFSYTFMDKIILPQGWNDWGDQRRDSRVYYGEYKCTGPGANLTGRVAWARVLTDEEARPFIGTYYV |
Full Sequence |
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Protein Sequence Length: 382 Download |
MASKSHFYLN TFFFLLLSIF CLKSSSWSLL DTERDYSRWV SWNGNNHQKR AMLMAKSTVQ 60 TPGADGKLVL DGKLRQAEMN SVRVTVSQDG NGEFKTIKEA INSIPPYNTR RVIIAIKPGV 120 YREKIFIPRT FPFVTFLGDS SEPPTITGND TASVSGKDGK PLRTYQSATV AVDANYFVAI 180 SMKFENTAPH VIGTKQEQAV ALRISGTKAA FYNCSFFGDQ DTLYDHKGLH YFNNCFIQGS 240 VDFIFGSGRS FYENCHLNSV AKKVASLTAQ KRSNSSLASG FSFKDSTITG SGLIYLGRAW 300 GDYSRVIFSY TFMDKIILPQ GWNDWGDQRR DSRVYYGEYK CTGPGANLTG RVAWARVLTD 360 EEARPFIGTY YVEGDTWLIS P* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 1.0e-102 | 84 | 378 | 297 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 1.0e-104 | 80 | 378 | 302 | + pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-106 | 79 | 378 | 300 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-128 | 7 | 381 | 381 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 7.0e-138 | 24 | 378 | 357 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF22736.1 | 0 | 15 | 381 | 5 | 379 | pectinesterase family protein [Brachypodium distachyon] |
EMBL | CAN79461.1 | 0 | 1 | 381 | 1 | 381 | hypothetical protein [Vitis vinifera] |
GenBank | EEC69509.1 | 0 | 70 | 381 | 95 | 411 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
RefSeq | NP_001067039.1 | 0 | 70 | 381 | 94 | 410 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002320279.1 | 0 | 92 | 378 | 1 | 287 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 84 | 378 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.4013e-45 | 86 | 380 | 7 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 7e-21 | 72 | 366 | 24 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 4e-19 | 80 | 366 | 5 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 4e-19 | 80 | 366 | 5 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |