| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.014G160300.1 |
| Family | GT19 |
| Protein Properties | Length: 465 Molecular Weight: 51947.6 Isoelectric Point: 8.7591 |
| Chromosome | Chromosome/Scaffold: 14 Start: 12616132 End: 12619126 |
| Description | transferases, transferring glycosyl groups |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT19 | 44 | 423 | 0 |
| VFIVAGEVSGDSIASRLMASLKKLSPLPIRFSGVGGPRMSKEGLESLFPMEDISVMGMWELLPHLNKFRVRLKETIEGAILFQPHVVVTVDSKGFSFRLL KQLRARYGWQELNGPLHFHYVAPSFWAWKGGEARLKGLANFVDHILCILPNEEAVCKLNGLDATFVGHPVLEDIFEFNLGKQASPHDLKIEGNSEDFRRK YALSSGAAVISLLPGSRLQEVIRMLSIFAHTFDQLKDSIPELITVIHVAPNQHVENYIDGVIRKWPVPAILIPGGHQHLKYDAFSASRIALCTSGTVAME LQLARLPCVVAYRAHILTEWYIQYKAKIPYISLPNILTDSAIIPEALFQACTPTNLASLLMKLMHNKRLQEEQIVAAENV | |||
| Full Sequence |
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| Protein Sequence Length: 465 Download |
| MLLRTIRDIK NGGEMGFSSL LRRSFSVRSR TVVDMGDKDG ELRVFIVAGE VSGDSIASRL 60 MASLKKLSPL PIRFSGVGGP RMSKEGLESL FPMEDISVMG MWELLPHLNK FRVRLKETIE 120 GAILFQPHVV VTVDSKGFSF RLLKQLRARY GWQELNGPLH FHYVAPSFWA WKGGEARLKG 180 LANFVDHILC ILPNEEAVCK LNGLDATFVG HPVLEDIFEF NLGKQASPHD LKIEGNSEDF 240 RRKYALSSGA AVISLLPGSR LQEVIRMLSI FAHTFDQLKD SIPELITVIH VAPNQHVENY 300 IDGVIRKWPV PAILIPGGHQ HLKYDAFSAS RIALCTSGTV AMELQLARLP CVVAYRAHIL 360 TEWYIQYKAK IPYISLPNIL TDSAIIPEAL FQACTPTNLA SLLMKLMHNK RLQEEQIVAA 420 ENVIKLLFPS ERIINNLEEQ MGWKFPNCTP SMIASSTILS HVKS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK01021 | lpxB | 3.0e-40 | 45 | 427 | 394 | + lipid-A-disaccharide synthase; Reviewed | ||
| TIGR00215 | lpxB | 9.0e-51 | 44 | 409 | 370 | + lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| pfam02684 | LpxB | 5.0e-74 | 44 | 440 | 397 | + Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. | ||
| PRK00025 | lpxB | 5.0e-99 | 42 | 417 | 378 | + lipid-A-disaccharide synthase; Reviewed | ||
| COG0763 | LpxB | 1.0e-99 | 42 | 417 | 378 | + Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008915 | lipid-A-disaccharide synthase activity |
| GO:0009245 | lipid A biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28885.1 | 0 | 35 | 463 | 1 | 430 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_001140462.1 | 0 | 32 | 459 | 29 | 459 | hypothetical protein LOC100272521 [Zea mays] |
| RefSeq | NP_178535.2 | 0 | 17 | 463 | 14 | 454 | transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002458499.1 | 0 | 32 | 459 | 9 | 439 | hypothetical protein SORBIDRAFT_03g034785 [Sorghum bicolor] |
| RefSeq | XP_002528957.1 | 0 | 3 | 463 | 6 | 468 | Lipid-A-disaccharide synthase, putative [Ricinus communis] |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| lipid IVA biosynthesis | LIPIDADISACCHARIDESYNTH-RXN | EC-2.4.1.182 | lipid-A-disaccharide synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EY717263 | 273 | 82 | 354 | 0 |
| EE622357 | 258 | 91 | 348 | 0 |
| EX686418 | 261 | 204 | 463 | 0 |
| DC601543 | 205 | 172 | 376 | 0 |
| EY717263 | 41 | 339 | 379 | 0.00002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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