Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.014G162300.1 |
Family | GH28 |
Protein Properties | Length: 354 Molecular Weight: 37491.9 Isoelectric Point: 8.1603 |
Chromosome | Chromosome/Scaffold: 14 Start: 12779280 End: 12780729 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 45 | 340 | 0 |
YACAAKEASTVVIAKGNYMVGPLKFEGPCTAPVTVKVQGTLKAPADPKRLRDDWVAFRNVEGLTVSGGGIFDGQGAIACKLFHMNILNCNNVTFQNIVIN APKNSLNTDGIHIGRSTMVNITGATIRTGDDCVSLGDGCQQINVEKVTCGPGHGISIGSLGRYHDEQPVIGVTVRTCTLTNTENGVRIKTWPASPSGVAS NVNFEDIIMNNVSNPILIDQEYCPYNNCLAKVPSRVKISDVRFEGIRGTSATQVAVKIVCSRGLPCQNVSVEDINLVYNGKEGSSTSLCANVKPQV |
Full Sequence |
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Protein Sequence Length: 354 Download |
MAAGVAYHLC FLLLVTQVQG SNFDVKAYGA KANGMTDDSK RLERYACAAK EASTVVIAKG 60 NYMVGPLKFE GPCTAPVTVK VQGTLKAPAD PKRLRDDWVA FRNVEGLTVS GGGIFDGQGA 120 IACKLFHMNI LNCNNVTFQN IVINAPKNSL NTDGIHIGRS TMVNITGATI RTGDDCVSLG 180 DGCQQINVEK VTCGPGHGIS IGSLGRYHDE QPVIGVTVRT CTLTNTENGV RIKTWPASPS 240 GVASNVNFED IIMNNVSNPI LIDQEYCPYN NCLAKVPSRV KISDVRFEGI RGTSATQVAV 300 KIVCSRGLPC QNVSVEDINL VYNGKEGSST SLCANVKPQV SGKVFPATCT PSA* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-70 | 21 | 346 | 371 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-77 | 5 | 349 | 387 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-84 | 23 | 349 | 373 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-103 | 47 | 337 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-126 | 23 | 350 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA51033.1 | 0 | 20 | 353 | 67 | 440 | exopolygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002274096.1 | 0 | 19 | 350 | 24 | 392 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282563.1 | 0 | 23 | 349 | 28 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 23 | 350 | 28 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282594.1 | 0 | 23 | 350 | 28 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-19 | 151 | 341 | 152 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-19 | 151 | 341 | 152 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-19 | 151 | 341 | 152 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-19 | 151 | 341 | 152 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-19 | 151 | 341 | 152 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |