y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.014G171100.1 |
Family | GT47 |
Protein Properties | Length: 506 Molecular Weight: 57640.1 Isoelectric Point: 9.3176 |
Chromosome | Chromosome/Scaffold: 14 Start: 13792095 End: 13793971 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 176 | 456 | 0 |
KLFKIYIYKEGDPPMFHDGPCKSIYSSEGRFIHELEKGKSFTTTDPDEALVYFLPFSVVMLVQYLYVPGSHEIDAIGNTVVDYINVIADKYPFWNRSLGA DHFILSCHDWGPRTSSYVPHLFNNSIRVLCNANTSEGFNPKKDASFPEIHLRTGEITGLVGGPSPSRRSILAFFAGRLHGHIRRLLLEQWKDKDQDVQVH DQLRNGMSYDSMLKNSRFCLCPSGYEVASPRIVEAIYAECVPVLISDGYVPPFSDVLNWKAFSIQVQVKDIPKIKDILMGI |
Full Sequence |
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Protein Sequence Length: 506 Download |
MRRYPNSKSL FSSSSLSLGS SPFLVLLVVL PLIVIPVFIF TSCLKTSSWS KYSMPSPLTW 60 RVGFFDNSYT FASFAQSEAS VVGYNTSTLN SLYPDDQATS SLRESNDEGA VARGVVKRHS 120 KLEKMEANLA KIRSSIREAA RVRNLTSIYE DPDYVPKGPI YRNANAFHRS YLEMEKLFKI 180 YIYKEGDPPM FHDGPCKSIY SSEGRFIHEL EKGKSFTTTD PDEALVYFLP FSVVMLVQYL 240 YVPGSHEIDA IGNTVVDYIN VIADKYPFWN RSLGADHFIL SCHDWGPRTS SYVPHLFNNS 300 IRVLCNANTS EGFNPKKDAS FPEIHLRTGE ITGLVGGPSP SRRSILAFFA GRLHGHIRRL 360 LLEQWKDKDQ DVQVHDQLRN GMSYDSMLKN SRFCLCPSGY EVASPRIVEA IYAECVPVLI 420 SDGYVPPFSD VLNWKAFSIQ VQVKDIPKIK DILMGISQRQ YLRMQRRVKQ VQRHFVVNGI 480 PKRFDVFHMT IHSIWLRRLN IRIHD* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-54 | 174 | 456 | 301 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAU04753.1 | 0 | 169 | 505 | 7 | 343 | EXO [Cucumis melo] |
EMBL | CBI28483.1 | 0 | 117 | 505 | 28 | 416 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264076.1 | 0 | 174 | 505 | 1 | 332 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320538.1 | 0 | 174 | 505 | 1 | 332 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524591.1 | 0 | 47 | 505 | 46 | 504 | catalytic, putative [Ricinus communis] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |