y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.015G012400.1 |
Family | GT5 |
Protein Properties | Length: 650 Molecular Weight: 71520.1 Isoelectric Point: 5.8277 |
Chromosome | Chromosome/Scaffold: 15 Start: 792937 End: 799908 |
Description | Glycogen/starch synthases, ADP-glucose type |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 140 | 639 | 0 |
NIVFVTSEAAPYSKTGGLGDVCGSLPIVLAARGHRVMVVSPRYLHGSPADKNFAGASELDCHIKVYCFGGEQEVAFFHEYREGVDWVFVDHPSYHRPGNP YGDSRGAFGDNQFRFALLCHAACEAPLVLPLGGYTYGEKCLFLVNDWHAGLVPVLLASKYRPYGVYKDARTILVIHNLAHQGVEPAATYTNLGLPSEWYG ALGWVFPTWARTHALDTGEAVNLLKGAIVTVDRILTVSKGYAWEITTVEGGYGLHELLSSRRSVLNGITNGIDIYEWNPSSDKHIASNYSVDDLSGKVQC KIALQKELGLPIKPDCPLIGFIGRLDYQKGIDLIRWATPELLEDDVQFVMLGSGDPLYEDWMRATESTYKDKFRGWVGFNIPISHKITAGADILLMPSRF EPCGLNQLYAMRYGTVPVVHGTGGLRDTVQAFDPYSKGGLGEGTGWIFSPLSKESMLAALRVAIMTYRDHKSSWEGIMKRGMVKDSTWENAAVHYEQVFE |
Full Sequence |
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Protein Sequence Length: 650 Download |
MESLCIVGNG GVSTCQAFTR LDTTRVGLRP RAQLGFGCFV RERYKYGNLV IARSGRSEVG 60 NSKDGNFAVE NEKEEKRGGL ILGPERDSSG SIIGFNLIPP SGMDISFTVL ESHEDATTGG 120 TEEAEDIEGV EKVQTRVTYN IVFVTSEAAP YSKTGGLGDV CGSLPIVLAA RGHRVMVVSP 180 RYLHGSPADK NFAGASELDC HIKVYCFGGE QEVAFFHEYR EGVDWVFVDH PSYHRPGNPY 240 GDSRGAFGDN QFRFALLCHA ACEAPLVLPL GGYTYGEKCL FLVNDWHAGL VPVLLASKYR 300 PYGVYKDART ILVIHNLAHQ GVEPAATYTN LGLPSEWYGA LGWVFPTWAR THALDTGEAV 360 NLLKGAIVTV DRILTVSKGY AWEITTVEGG YGLHELLSSR RSVLNGITNG IDIYEWNPSS 420 DKHIASNYSV DDLSGKVQCK IALQKELGLP IKPDCPLIGF IGRLDYQKGI DLIRWATPEL 480 LEDDVQFVML GSGDPLYEDW MRATESTYKD KFRGWVGFNI PISHKITAGA DILLMPSRFE 540 PCGLNQLYAM RYGTVPVVHG TGGLRDTVQA FDPYSKGGLG EGTGWIFSPL SKESMLAALR 600 VAIMTYRDHK SSWEGIMKRG MVKDSTWENA AVHYEQVFEW AFIDPPYIN* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 3.0e-104 | 144 | 638 | 506 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 3.0e-146 | 140 | 647 | 515 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 2.0e-175 | 140 | 639 | 506 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 140 | 640 | 501 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 0 | 140 | 639 | 506 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV25893.1 | 0 | 1 | 649 | 1 | 633 | starch synthase isoform I [Manihot esculenta] |
DDBJ | BAD18845.1 | 0 | 62 | 647 | 53 | 644 | starch synthase I precursor [Phaseolus vulgaris] |
EMBL | CBI23015.1 | 0 | 80 | 649 | 2 | 568 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277372.1 | 0 | 29 | 649 | 21 | 633 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002321996.1 | 0 | 1 | 649 | 1 | 649 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 140 | 638 | 11 | 508 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 3vue_A | 0 | 140 | 638 | 11 | 508 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 140 | 638 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 140 | 638 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 140 | 638 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO595058 | 492 | 156 | 647 | 0 |
HO581986 | 368 | 249 | 615 | 0 |
GO872237 | 347 | 300 | 646 | 0 |
GO842198 | 336 | 163 | 498 | 0 |
HO581986 | 34 | 614 | 647 | 0.0001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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