Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.015G012400.3 |
Family | GT5 |
Protein Properties | Length: 647 Molecular Weight: 71126.6 Isoelectric Point: 5.7143 |
Chromosome | Chromosome/Scaffold: 15 Start: 792948 End: 799908 |
Description | Glycogen/starch synthases, ADP-glucose type |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 137 | 636 | 0 |
NIVFVTSEAAPYSKTGGLGDVCGSLPIVLAARGHRVMVVSPRYLHGSPADKNFAGASELDCHIKVYCFGGEQEVAFFHEYREGVDWVFVDHPSYHRPGNP YGDSRGAFGDNQFRFALLCHAACEAPLVLPLGGYTYGEKCLFLVNDWHAGLVPVLLASKYRPYGVYKDARTILVIHNLAHQGVEPAATYTNLGLPSEWYG ALGWVFPTWARTHALDTGEAVNLLKGAIVTVDRILTVSKGYAWEITTVEGGYGLHELLSSRRSVLNGITNGIDIYEWNPSSDKHIASNYSVDDLSGKVQC KIALQKELGLPIKPDCPLIGFIGRLDYQKGIDLIRWATPELLEDDVQFVMLGSGDPLYEDWMRATESTYKDKFRGWVGFNIPISHKITAGADILLMPSRF EPCGLNQLYAMRYGTVPVVHGTGGLRDTVQAFDPYSKGGLGEGTGWIFSPLSKESMLAALRVAIMTYRDHKSSWEGIMKRGMVKDSTWENAAVHYEQVFE |
Full Sequence |
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Protein Sequence Length: 647 Download |
MESLCIVGNG GVSTCQAFTR LDTTRVGLRP RAQLGFGCFV RERYKYGNLV IARSGRSEVG 60 NSKDGNFAVE NEKEEKRGGL ILGPERDSSG SIIGFNLIPP SGDGEVLESH EDATTGGTEE 120 AEDIEGVEKV QTRVTYNIVF VTSEAAPYSK TGGLGDVCGS LPIVLAARGH RVMVVSPRYL 180 HGSPADKNFA GASELDCHIK VYCFGGEQEV AFFHEYREGV DWVFVDHPSY HRPGNPYGDS 240 RGAFGDNQFR FALLCHAACE APLVLPLGGY TYGEKCLFLV NDWHAGLVPV LLASKYRPYG 300 VYKDARTILV IHNLAHQGVE PAATYTNLGL PSEWYGALGW VFPTWARTHA LDTGEAVNLL 360 KGAIVTVDRI LTVSKGYAWE ITTVEGGYGL HELLSSRRSV LNGITNGIDI YEWNPSSDKH 420 IASNYSVDDL SGKVQCKIAL QKELGLPIKP DCPLIGFIGR LDYQKGIDLI RWATPELLED 480 DVQFVMLGSG DPLYEDWMRA TESTYKDKFR GWVGFNIPIS HKITAGADIL LMPSRFEPCG 540 LNQLYAMRYG TVPVVHGTGG LRDTVQAFDP YSKGGLGEGT GWIFSPLSKE SMLAALRVAI 600 MTYRDHKSSW EGIMKRGMVK DSTWENAAVH YEQVFEWAFI DPPYIN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 4.0e-104 | 141 | 635 | 506 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 3.0e-146 | 137 | 644 | 515 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 2.0e-175 | 137 | 636 | 506 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 137 | 637 | 501 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 0 | 137 | 636 | 506 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV25893.1 | 0 | 1 | 646 | 1 | 633 | starch synthase isoform I [Manihot esculenta] |
EMBL | CBI23015.1 | 0 | 80 | 646 | 2 | 568 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197818.1 | 0 | 1 | 646 | 1 | 652 | SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002277372.1 | 0 | 29 | 646 | 21 | 633 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002321996.1 | 0 | 1 | 646 | 1 | 649 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 137 | 635 | 11 | 508 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3vue_A | 0 | 137 | 635 | 11 | 508 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 137 | 635 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 137 | 635 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 137 | 635 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO595058 | 492 | 153 | 644 | 0 |
HO581986 | 368 | 246 | 612 | 0 |
GO872237 | 347 | 297 | 643 | 0 |
GO842198 | 336 | 160 | 495 | 0 |
HO581986 | 34 | 611 | 644 | 0.0001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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